PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021273528.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HD-ZIP

Protein Properties

Length: 284aa MW: 31327.3 Da PI: 8.5649

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021273528.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	7.9e-19	140	194	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Lee F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k XP_021273528.1 140 RKKLRLTKDQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 194 788899***********************************************98 PP
2	HD-ZIP_I/II	125	3.5e-40	140	229	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+k+q++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l XP_021273528.1 140 RKKLRLTKDQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 229 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence
MGLDDACNTG LVLGLGISST LETSSKANNQ TPKKSSCVKF EPTATAAAGF EPSLTLGLSG 60 ESYQVVTASK KIDVNKGGYH HHEEPAAAGD LYRQASPHSA VSSFSSGRVK RERDLSSEEV 120 EVEKNSSRVS DEDEDGVNAR KKLRLTKDQS ALLEESFKQH STLNPKQKQA LARQLNLRPR 180 QVEVWFQNRR ARTKLKQTEV DCEFLKKCCE TLTDENRRLQ KELQELKALK LAQPFYMHMP 240 AATLTMCPSC ERIGGVGDGN SKSPFSMASK PHFYNPFTNP SAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	197	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	5e-99	HD-ZIP family protein