PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN25554.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family HD-ZIP
Protein Properties Length: 841aa    MW: 92136 Da    PI: 6.2366
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN25554.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-182482357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  PIN25554.1 24 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 82
                56789****************************************************97 PP
2START1601.8e-501633702204
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W ++++++e+      g  g+++l ++++
  PIN25554.1 163 IAEETLAEFISKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSVEIFTMFPAGngGTIELLYMQT 260
                 7899******************************************************.7777777777*************9999999********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +++++l++ Rdf+++Ry+ +l+ g++v++++S++ +   p+    s++vRaellpSg+li+p+++g+s +++v+h +l++++++++lr+l++s+ + ++
  PIN25554.1 261 YVPTTLASaRDFWTLRYTTTLENGSLVVCERSLSGTGAGPNaaaASQFVRAELLPSGYLIRPCEGGGSIIHIVDHLNLQAWSVPEVLRPLYESSKVVAQ 359
                 **************************************9999999****************************************************** PP

                 HHHHHHTXXXX CS
       START 194 ktwvatlqrqc 204
                 k++ a+l++ +
  PIN25554.1 360 KNTIAALRYIR 370
                 ******99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    
MAMVAQHHRE SSSGSINKHL DSGKYVRYTA EQVEALERVY AECPKPSSLR RQQLIRECPI  60
LANIEPKQIK VWFQNRRCRE KQRKESTRLQ SVNRKLTAMN KLLMEENDRL QKQVSQLVCE  120
NGYMRQQLQS ASAPTTDASC ESAVTTPQHS LRDANNPAGL LSIAEETLAE FISKATGTAV  180
DWVQMPGMKP GPDSVGIFAI SQSCSGVAAR ACGLVSLEPT KIAEILKDRP SWFRDCRSVE  240
IFTMFPAGNG GTIELLYMQT YVPTTLASAR DFWTLRYTTT LENGSLVVCE RSLSGTGAGP  300
NAAAASQFVR AELLPSGYLI RPCEGGGSII HIVDHLNLQA WSVPEVLRPL YESSKVVAQK  360
NTIAALRYIR QIAQETSGEV VYGLGRQPAV LRTFSQRLSR CFNDAINGFN DDGWSLLNCD  420
GAEDVVVAIT SAKNHATCSN SLSLLGGILC AKASMLLQNV PPAVLVRFLS EHRSEWADFN  480
VDAYAASSLK AGTYTYPGMR STRFTGSQII MPLGHTIEHE EMLEVIRLEG HSLSHEDPFA  540
SRDIHLLQMC SGVDENAVGA CSELVFAPID EMFPDDAPLL PSGFRIIPLD SKPGGDSPEL  600
LTSHKTLDLT SSLDVGPASS HAAENAASSY NASRSVLTIA FQFPFESNLQ DNVATMARQY  660
VRSVITSVQR VAMAISPSGS SPTVGPKLSP ASPEALTLAH WICQSYSFHM GTELLRPDSM  720
SSESVLKTLW HHQDAILCCS LKALPVFIFA NQAGLDMLET TLVALQDIML DKIFDDSGRM  780
ALFSEFAKIM QQGFAYLPGG VCTSTMGRHV SYEQAIVWKV FAAEENTLHC LAFSFVNWSF  840
V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein