PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN23922.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

TCP

Protein Properties

Length: 378aa MW: 40061.1 Da PI: 8.0835

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN23922.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	135.6	4.4e-42	83	234	2	125
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + PIN23922.1 83 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPsqlrstyfnpn 181 789******************************************************************999877777777775555577778889999 PP TCP 89 ................kaaksaakskksqksaasalnlakesrakarararer 125 +++s++ +++ k++++ l+l + + + r+r e+ PIN23922.1 182 ytipqrrglfpsiglsPESSSTTILNFPAKQESNSLELTETEESIGRKRRAEQ 234 99999999999999965555555888888888888888885555555553322 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MIMEGGDDHL HLHHAHHHHH HHHQHGGGRP TFPFQLLEKK EDESTASPAY PSNPTPTTTT 60 TTTTTTSAAS STLQLQEASK KQPPKRTSTK DRHTKVDGRG RRIRMPALCA ARVFQLTREL 120 GHKSDGETIE WLLQQAEPAV IAATGTGTIP ANFTSLNISL RSSGSSMSVP SQLRSTYFNP 180 NYTIPQRRGL FPSIGLSPES SSTTILNFPA KQESNSLELT ETEESIGRKR RAEQELHLQH 240 NQMGNYLLQS STGALPASHA STPANFWMLN NNQVTGGGDS LWTFPSFNIN NSSAAAAAAL 300 YRGTMSSGLH FMNFPGPVAL LPGGGGGGGG GGGSEGLGML AGLNPYRSGG AGVSESQASG 360 SHGGGGGDER HDTASHHS

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MIMEGGDDHL HLHHAHHHHH HHHQHGGGRP TFPFQLLEKK EDESTASPAY PSNPTPTTTT  60
TTTTTTSAAS STLQLQEASK KQPPKRTSTK DRHTKVDGRG RRIRMPALCA ARVFQLTREL  120
GHKSDGETIE WLLQQAEPAV IAATGTGTIP ANFTSLNISL RSSGSSMSVP SQLRSTYFNP  180
NYTIPQRRGL FPSIGLSPES SSTTILNFPA KQESNSLELT ETEESIGRKR RAEQELHLQH  240
NQMGNYLLQS STGALPASHA STPANFWMLN NNQVTGGGDS LWTFPSFNIN NSSAAAAAAL  300
YRGTMSSGLH FMNFPGPVAL LPGGGGGGGG GGGSEGLGML AGLNPYRSGG AGVSESQASG  360
SHGGGGGDER HDTASHHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	4e-52	TCP family protein