PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN22985.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

GRAS

Protein Properties

Length: 385aa MW: 43899.8 Da PI: 5.0256

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN22985.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	124.2	1.5e-38	117	378	5	273
GRAS 5 LlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103 + ea+++g++ela+ ++ l+e ++p g++m+R+a + + + +++ ++++ + ++alk+ ++ P+ +f+hltaN+aIl PIN22985.1 117 FRAYGEAMENGHKELAKVIVMSLNEKSNPMGSTMERVAYNLFKSKE-------------HQSEYLRQESINNFITALKVVYQSLPLGRFAHLTANSAIL 202 55667899***************************986554333.............33333444458899********************** PP GRAS 104 eavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp. 198 e++ ++ e++H+iDfdi++ +QWp+L++aL+++++g l++T ++ e++ + e eet++rL+ A+++g +fe++ ++++dl +e + +k+ PIN22985.1 203 ESMPNDmETLHVIDFDIGEAIQWPPLMEALSQKQKG---LKLTSIKYGEENppLRWEFEETKKRLQCHAKQCGPKFEIEE---RSTKDLAYEVMGTKKn 295 998999******************9998...***98888888999*****************98...799******999 PP GRAS 199 ...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk...vvvvveqeadh...nsesFlerfleal.eyysalfdslea 273 +E l+ n+++ l ++ ++++ ++ +e+L++ k+l ++ ++v+ + ea ns+ ++ fl+ l y a+f+sle PIN22985.1 296 gqgKEWLVFNCMVGLPHMGRRRARSS--VKEFLRIAKELLANfegILVFGNGEAGVssdNSSCGFTSFLDQLaTKYGAIFESLER 378 999***********95555444..69*****9976668999999966521344433444444441569*****86 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MMLSQLLLPT FSTFNHNAHY DPHIVFRGVY GSNFSSLFDS STVSSNSYDP LPFSNEVFDL 60 ENLETFSSKE IEEICKWINA NETEENSCLY LEYIKNSIIL PTEEMELDNQ LSLLHLFRAY 120 GEAMENGHKE LAKVIVMSLN EKSNPMGSTM ERVAYNLFKS KEHQSEYLRQ ESINNFITAL 180 KVVYQSLPLG RFAHLTANSA ILESMPNDME TLHVIDFDIG EAIQWPPLME ALSQKQKGLK 240 LTSIKYGEEN PPLRWEFEET KKRLQCHAKQ CGPKFEIEER STKDLAYEVM GTKKNGQGKE 300 WLVFNCMVGL PHMGRRRARS SVKEFLRIAK ELLANFEGIL VFGNGEAGVS SDNSSCGFTS 360 FLDQLATKYG AIFESLERDE KTLQP

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MMLSQLLLPT FSTFNHNAHY DPHIVFRGVY GSNFSSLFDS STVSSNSYDP LPFSNEVFDL  60
ENLETFSSKE IEEICKWINA NETEENSCLY LEYIKNSIIL PTEEMELDNQ LSLLHLFRAY  120
GEAMENGHKE LAKVIVMSLN EKSNPMGSTM ERVAYNLFKS KEHQSEYLRQ ESINNFITAL  180
KVVYQSLPLG RFAHLTANSA ILESMPNDME TLHVIDFDIG EAIQWPPLME ALSQKQKGLK  240
LTSIKYGEEN PPLRWEFEET KKRLQCHAKQ CGPKFEIEER STKDLAYEVM GTKKNGQGKE  300
WLVFNCMVGL PHMGRRRARS SVKEFLRIAK ELLANFEGIL VFGNGEAGVS SDNSSCGFTS  360
FLDQLATKYG AIFESLERDE KTLQP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	5e-20	GRAS family protein