PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN21109.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

GRF

Protein Properties

Length: 565aa MW: 61351.1 Da PI: 8.5423

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN21109.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.2	1.6e-24	193	237	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e PIN21109.1 193 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 237 79****************************************985 PP
2	QLQ	53.8	5.7e-19	126	162	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT +Q+ +L++Q+l+yKy+ an+PvP++Ll +i+k PIN21109.1 126 GPFTSSQWIELEQQALIYKYITANVPVPSYLLNPIRK 162 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence
MDFGLVGFDN LVSPNSAINN VAFSLDNNKQ KCYGSGFLKQ ERGAINEDDF RDFKVAKTAS 60 CNDPMLKIPL QRSNTSNLTE GHQQMLCFSS PNSLPYYSTA FSRNAGYGFT GVNSASMQAV 120 LSGVRGPFTS SQWIELEQQA LIYKYITANV PVPSYLLNPI RKAFESAGFS SFSGLRSNPL 180 GWGAFHLGFS NTDPEPGRCR RTDGKKWRCS RDAVADQKYC ERHMNRGRHR SRKPVEGQSG 240 HSASATTTTN SNTKPPPASS SSASVVPAGG VSNSLGLSHH HQLSNVHHGS SNHLSGIPNI 300 NRSLLDKENT DGPYQHTSLH SITSPKVFLK NNNYSIPKQQ NPYEGSSGPE FGLVCSDSLL 360 NPLNRSSFLV NCRNYSTTSD NLKDHEHKSQ NHALRQFMDD WPKNNSERSS ISWPNIDLQP 420 DRTQLSISIP MVTSDFMSSA SSPTSEKLRA SPLRLSGELE MGLGVGTVAC QENLIQLNCV 480 PISWEPSPGG PLGEVLHTTG DSKSNTKPLN LIDSWDNSPR LTSSPTGVLQ RGAFGSLSNS 540 SAGSSPRTDG VMGSSVMNHS SFPAL

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence

MDFGLVGFDN LVSPNSAINN VAFSLDNNKQ KCYGSGFLKQ ERGAINEDDF RDFKVAKTAS  60
CNDPMLKIPL QRSNTSNLTE GHQQMLCFSS PNSLPYYSTA FSRNAGYGFT GVNSASMQAV  120
LSGVRGPFTS SQWIELEQQA LIYKYITANV PVPSYLLNPI RKAFESAGFS SFSGLRSNPL  180
GWGAFHLGFS NTDPEPGRCR RTDGKKWRCS RDAVADQKYC ERHMNRGRHR SRKPVEGQSG  240
HSASATTTTN SNTKPPPASS SSASVVPAGG VSNSLGLSHH HQLSNVHHGS SNHLSGIPNI  300
NRSLLDKENT DGPYQHTSLH SITSPKVFLK NNNYSIPKQQ NPYEGSSGPE FGLVCSDSLL  360
NPLNRSSFLV NCRNYSTTSD NLKDHEHKSQ NHALRQFMDD WPKNNSERSS ISWPNIDLQP  420
DRTQLSISIP MVTSDFMSSA SSPTSEKLRA SPLRLSGELE MGLGVGTVAC QENLIQLNCV  480
PISWEPSPGG PLGEVLHTTG DSKSNTKPLN LIDSWDNSPR LTSSPTGVLQ RGAFGSLSNS  540
SAGSSPRTDG VMGSSVMNHS SFPAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	1e-66	GRF family protein