PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN19332.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

LSD

Protein Properties

Length: 369aa MW: 40186.6 Da PI: 4.3235

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN19332.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.4	2.1e-12	315	339	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP GAp+V+C++C +V PIN19332.1 315 CGGCAVLLMYPHGAPAVQCSSCRFV 339 **********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MQEEKTEMLT EEEEEEEEDD DGPPPGFQCI IAPQPPPAEK VEAGGDDEED EEEGPPPGFH 60 FVAPKPPPSV SPSEMARSSK QDDVEDDEDG PPPGWEFSTL ANALPKTPSN STDISDIKIE 120 SNEELDEGPP PGWETVLPNQ MPPPHTPPLQ PSSSVSSSFL APNCNIQVAH ERFVFSEFED 180 IEMESKQKIA KNDEDVPPSV SKSKPITGNS SPATSPLQQL PPSELSCDKG SKEDDKNIGD 240 KKPTYVHQLS SPLQQLPPTP PTPAPAPSSS EKAQLVCGTC RKLCVYPRGA KWVQCPDCRE 300 VNFVLEAHDV GQVKCGGCAV LLMYPHGAPA VQCSSCRFVT EIGGHNRRPP LSVQQAQRRR 360 RPIRARQPT

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MQEEKTEMLT EEEEEEEEDD DGPPPGFQCI IAPQPPPAEK VEAGGDDEED EEEGPPPGFH  60
FVAPKPPPSV SPSEMARSSK QDDVEDDEDG PPPGWEFSTL ANALPKTPSN STDISDIKIE  120
SNEELDEGPP PGWETVLPNQ MPPPHTPPLQ PSSSVSSSFL APNCNIQVAH ERFVFSEFED  180
IEMESKQKIA KNDEDVPPSV SKSKPITGNS SPATSPLQQL PPSELSCDKG SKEDDKNIGD  240
KKPTYVHQLS SPLQQLPPTP PTPAPAPSSS EKAQLVCGTC RKLCVYPRGA KWVQCPDCRE  300
VNFVLEAHDV GQVKCGGCAV LLMYPHGAPA VQCSSCRFVT EIGGHNRRPP LSVQQAQRRR  360
RPIRARQPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-31	LSD family protein