PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN18690.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family HD-ZIP
Protein Properties Length: 818aa    MW: 90957.8 Da    PI: 5.2667
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN18690.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.53e-2086141156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  PIN18690.1  86 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 141
                 688899***********************************************998 PP
2START143.52.1e-452915152206
                 HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 la + ++el+k+   +ep+W++s+   + +n +e+ + f+ s +       +++ea ++++vv+m++ +lv  +l+ + +W e ++    +a+tl+v+ 
  PIN18690.1 291 LAVSSMNELLKMCHTGEPLWKTSPqgkQVLNLEEYSRMFSWSVNlkqhaseFRTEATKDTAVVIMNSITLVDAFLNAN-KWMELYPcliaRAKTLQVVH 388
                 57789*******************9887888889998887765599999*****************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE..-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvd..seqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                 s       g l+lm+aelqalsplvp R+  f Ry++   ++g+w+ivd  vd  + ++pp s ++ R  ++pSg++i++++ng+s+vtwveh+++++ 
  PIN18690.1 389 SEvsghasGSLHLMYAELQALSPLVPtREAHFFRYCQHnAEEGTWAIVDFPVDgfQIDYPP-SFPYYR--RRPSGCIIQDMPNGYSRVTWVEHAEVEDG 484
                 **************************************9**************54556788.899999..9**************************** PP

                 XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 176 lphwllrslvksglaegaktwvatlqrqcek 206
                  +h+++  lv sg+a+ga++w+a lqrqce+
  PIN18690.1 485 PIHQVYSCLVTSGVAFGAQRWLAVLQRQCER 515
                 *****************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    
MYGDCEVLSS MGGNDNSLYS SSIQNPNFNF MATINPFNMF SPIIPKEESL MGKSKEEMES  60
GSGSERIEGA SGNEQEADQQ QPQNKKKRYH RHTARQIQEM EALFKECPHP DDKQRLKLSQ  120
ELGLKPRQVK FWFQNRRTQM KAQQDRQENV VLRAENESLK NENFRLQATL RNIVCPNCGG  180
PAMLGEMGYD EQQLRIENAR LKEEFERMCC LVSQYTGRPM PAAMGQNTSL LAPSLDLDMS  240
SNPYPRKFEQ DHIGNCPPPD MIPLPFMPGN SHFPGNALII LEEEKSLALD LAVSSMNELL  300
KMCHTGEPLW KTSPQGKQVL NLEEYSRMFS WSVNLKQHAS EFRTEATKDT AVVIMNSITL  360
VDAFLNANKW MELYPCLIAR AKTLQVVHSE VSGHASGSLH LMYAELQALS PLVPTREAHF  420
FRYCQHNAEE GTWAIVDFPV DGFQIDYPPS FPYYRRRPSG CIIQDMPNGY SRVTWVEHAE  480
VEDGPIHQVY SCLVTSGVAF GAQRWLAVLQ RQCERLASLM ARNISDLGVI PSPEARKSLM  540
NLAQRMIRTF CLNISTSYGQ SWTALSDSAD DTVRITTRKV TEPGQPNGLI LSAVSTTWLP  600
YQHKQVFDFL RDERRRAQLE VLSNGNSLHE VAHIANGSNP GNCISLLRIN VASNSSQSVE  660
LVLQESCSDD SGSIVVYTTI DVDAIQMAMN GEDPSCIPLL PLGFVIIPLG QTNNNDPSTI  720
ANEANVKQLQ ASEDGHLPDS GCLLTVGLQV LASTIPTAKL NLSSVTAINH HLCNTVQQIN  780
AVLGNGNENG NFSAPITEPD LSSALDIKQS TDPVDSTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0HD-ZIP family protein