PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN17024.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

HD-ZIP

Protein Properties

Length: 268aa MW: 30614.9 Da PI: 4.5216

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN17024.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.6	2.1e-18	41	94	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ +eq++ Le+ Fe ++++ +++ +LAk+l+L+ rqV +WFqNrRa++k PIN17024.1 41 KKRRLAPEQVQFLEKSFEVENKLEPDRKVQLAKELDLQPRQVAIWFQNRRARYK 94 566899***********************************************9 PP
2	HD-ZIP_I/II	126.7	1e-40	40	131	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqv++LE+sFe e+kLep+rKv+la+eL+lqprqva+WFqnrRAR+ktk lEkdy+aLk++yd+lk+e ++L +e+e+L++e++ PIN17024.1 40 EKKRRLAPEQVQFLEKSFEVENKLEPDRKVQLAKELDLQPRQVAIWFQNRRARYKTKLLEKDYDALKASYDKLKAEYDALYAENEKLKNEVH 131 69**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence
MVNFEEVGGE NSKKRPFFTQ VDKKAENCNE DNDGCLHQPE KKRRLAPEQV QFLEKSFEVE 60 NKLEPDRKVQ LAKELDLQPR QVAIWFQNRR ARYKTKLLEK DYDALKASYD KLKAEYDALY 120 AENEKLKNEV HLLSQKLLLG ENGKPKPEPC DPISPLDFQP KDPSFSPEAA SNAVPVAAYK 180 QEEAASSARS DVFDSDSSHY TGGNPIEPAD SSHAFEPDPS DFSQEEDVSF LRPNCFPKLE 240 VECYDDLQPN SCNLGFPVQD QGTWFWPY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	1e-45	HD-ZIP family protein