PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN16834.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family C3H
Protein Properties Length: 372aa    MW: 41016.2 Da    PI: 7.0963
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN16834.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.79.9e-09134155426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 + C++f++ G Ck+Gd C +aHg
  PIN16834.1 134 SACPDFRK-GACKRGDACEYAHG 155
                 67******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    
MMMMIGDPPR SNPTVQIPSW DYQYVEDPTA HIRSPIIHSL SANSPDAYHY ENALAALQRY  60
LPSNEDDVVQ EDDEDADDFD IPVDAFSCDN FRMFEFKVKK CARARSHDWT ECPFAHPGEK  120
ARRRDPRKYH YSGSACPDFR KGACKRGDAC EYAHGVFECW LHPARYRTQP CKDGTHCRRR  180
VCFLAHTPEQ LRVLPYTGSP DGSPGGSGHD PFMLIGSSPR SAAYSPPLSP KASSPPVSPG  240
GSLSFNQLTE SMRGLHLGKM KMGMGMGMGL SMSPPSWGLG FGSPRSPSAA RPGFTSMPTT  300
PIRAVPRSGL SVFDAWEASC EEEPAMERVE SGRALREKIY AKLGRENSLD RVGGVGSPGK  360
VPDVEWVSEL VK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-100C3H family protein