PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN16696.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C3H

Protein Properties

Length: 697aa MW: 76301.5 Da PI: 6.1683

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN16696.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	282	302	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg PIN16696.1 282 PCPDFRK-GACRRGDMCEYAHG 302 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence
MNLDLLNVDT EDAFASLLEL AANNDLEGFK KYVDREPSSV DEVGLWYGRQ KGSNQMVLQH 60 MTPLMVAATY GSIDVLKLII SFPEVDVNRN CGIDKSTALH CAASGGSINA VDVVKLLLAA 120 GADPNLADAN GRRPLDVIVV SPKFLGMKYS LQTMLTTDTS FEEEHHDLRV SVCTSNSNSP 180 PLSPSRANGS PRSPELAPSP KGSKSSDVPA SPALEKKEYP IDPSLPDIKN SIYSTDEFRM 240 FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKYHYSC VPCPDFRKGA CRRGDMCEYA 300 HGVFECWLHP AQYRTRLCKD GTSCNRRVCF FAHTQEELRP LYVSTGSAVP SPRSSTSAAN 360 AMDFAAAMSL LPGSPSSVPV MSPSPFTPPM SPSTNGISNT GWPSQQNVPA LHLPGSNLQS 420 SRLRSSLNAR DIPREGLNIY SDIDVQQQQL LNELNRSVRP KTLTPSNLDD IFSAESSSPR 480 YSDQQLPSAV FSPTHKSAIM NQFQQQQQNM LSPIKTTFSP RNVDHSLLQA PFGVPSSGRM 540 SPRTVEPISP MSARMSMLAR QEQQHQQFRS LSSRDLGSDA AAAVASLDES WSKWGSPNGP 600 PEWAVMADDL GKLKRSSSFE LLNNGEEPDL SWVQSLVKES PQDIKEKSAP RVVGDVGTGT 660 GTSSSEGANT SNQIEQVDQS ALGAWLEQMQ LDQLMAQ

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence

MNLDLLNVDT EDAFASLLEL AANNDLEGFK KYVDREPSSV DEVGLWYGRQ KGSNQMVLQH  60
MTPLMVAATY GSIDVLKLII SFPEVDVNRN CGIDKSTALH CAASGGSINA VDVVKLLLAA  120
GADPNLADAN GRRPLDVIVV SPKFLGMKYS LQTMLTTDTS FEEEHHDLRV SVCTSNSNSP  180
PLSPSRANGS PRSPELAPSP KGSKSSDVPA SPALEKKEYP IDPSLPDIKN SIYSTDEFRM  240
FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKYHYSC VPCPDFRKGA CRRGDMCEYA  300
HGVFECWLHP AQYRTRLCKD GTSCNRRVCF FAHTQEELRP LYVSTGSAVP SPRSSTSAAN  360
AMDFAAAMSL LPGSPSSVPV MSPSPFTPPM SPSTNGISNT GWPSQQNVPA LHLPGSNLQS  420
SRLRSSLNAR DIPREGLNIY SDIDVQQQQL LNELNRSVRP KTLTPSNLDD IFSAESSSPR  480
YSDQQLPSAV FSPTHKSAIM NQFQQQQQNM LSPIKTTFSP RNVDHSLLQA PFGVPSSGRM  540
SPRTVEPISP MSARMSMLAR QEQQHQQFRS LSSRDLGSDA AAAVASLDES WSKWGSPNGP  600
PEWAVMADDL GKLKRSSSFE LLNNGEEPDL SWVQSLVKES PQDIKEKSAP RVVGDVGTGT  660
GTSSSEGANT SNQIEQVDQS ALGAWLEQMQ LDQLMAQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein