PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN16275.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family HB-PHD
Protein Properties Length: 625aa    MW: 71069.5 Da    PI: 9.4765
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN16275.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.8e-09492536953
                 HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
    Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                 ++ +e L  +F+ n  p ++ r  L+k+lgL+ ++V  WF+N R+
  PIN16275.1 492 NHAVEKLRLVFADNELPARAVRVSLSKQLGLEFEKVNKWFKNARY 536
                 688999*************************************97 PP
2PHD38.72.3e-13223278151
                 SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
         PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                 +C+ C+   +  +++++lCd +C+ +fH+kCl+++l+se++p g   w+C+ Ck+k
  PIN16275.1 223 ICAKCKLreALPDNDIILCDgTCNCAFHQKCLDPPLSSENIPPGdeGWFCKFCKKK 278
                 588898854455********56********************9999*******975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    
MNHIIDMPGA AKEGNRKKLH QKDDERTLQS MKQELKPHNK GHSSVSKRKV TNCLQEVNGN  60
TIAKKKIVKK GNVHKTKNSK KLVSSGGLKD KHTRISKKES ERTNDSDDKR GELKRRRRRR  120
RKKRKSSVEL DEASRLQRRT RYLLVKMKLE QNLIDAYSTE GWKGQSREKI KPEMELQRAQ  180
KQILKCKLGI REALHQLDLL SSEGRINDSA VAPDGSVHHE NIICAKCKLR EALPDNDIIL  240
CDGTCNCAFH QKCLDPPLSS ENIPPGDEGW FCKFCKKKME ILEATNAHLG TYFPIDSNWQ  300
DVFKEEAALP DGGNSMLFPE EEWPSDDSED DDYDPDRIEH SCSDSISRSD SNASDCSSSF  360
LGSLEDEALL ASGRFEERRN RSFDNSLELT GADSDEANSG EVVCRPRQRA AVDYIKLYDE  420
MFGKHATENE QISDDEDWGP TKRKRKVKET DAASTLMTLG ETAKRKSEEG PSELEEKQLA  480
KKIKRPIFRL PNHAVEKLRL VFADNELPAR AVRVSLSKQL GLEFEKVNKW FKNARYLALK  540
ARKAERSQVS EDVSPSTQME PISETAKGSH PDQMTSRNNM TSQICKGLKK CARRKNTDLL  600
IISLKIKQRR KPLAPRTDSN LVLFG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114119KRRRRR
2114120KRRRRRR
3114122KRRRRRRRK
4114124KRRRRRRRKKR
5115121KRRRRRR
6115123KRRRRRRRK
7115120RRRRRR
8115121RRRRRRR
9116122KRRRRRR
10116124KRRRRRRRK
11116121RRRRRR
12116122RRRRRRR
13117123KRRRRRR
14117125KRRRRRRRK
15118124KRRRRRR
16118148RRRRKKRKSSVELDEASRLQRRTRYLLVKMK
17119125KRRRRRR
18119124RRRKKR
19119125RRRKKRK
20119149RRRRKKRKSSVELDEASRLQRRTRYLLVKMK
21120150RRRRKKRKSSVELDEASRLQRRTRYLLVKMK
22121151RRRRKKRKSSVELDEASRLQRRTRYLLVKMK
23122152RRRRKKRKSSVELDEASRLQRRTRYLLVKMK
24442484KRKRKVKETDAASTLMTLGETAKRKSEEGPSELEEKQLAKKIK
25443485KRKRKVKETDAASTLMTLGETAKRKSEEGPSELEEKQLAKKIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-146HB-PHD family protein