PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN15052.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 827aa MW: 90698.5 Da PI: 6.5479 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.8 | 3.7e-18 | 25 | 82 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ PIN15052.1 25 YVRYTAEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 82 5789****************************************************97 PP | |||||||
2 | START | 158.2 | 6.6e-50 | 164 | 371 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 +aee+++e+++ka+ ++ Wv+++ +++g+ ++ +f+ ++++sg a+ra+g+v +++ +e+l+d++ W +++++ e+ g g+++l +++ PIN15052.1 164 IAEETLAEFLSKATGTAVDWVQMPGMKPGPGSVGIFAIAQSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELLYTQA 261 7899******************************************************.7777777777***********999999999********** PP TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS START 99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193 +a+++l+p Rdf+++Ry+ +l+ ++v++++S++ + p+ s++vRae+lpSg+li+p+++g+s +++v+h +l++++++++lr+l++s+ + ++ PIN15052.1 262 YAPTTLAPaRDFWTLRYTTTLENSSLVVCERSLSGTGAGPNaaaASQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQ 360 **************************************9999999****************************************************** PP HHHHHHTXXXX CS START 194 ktwvatlqrqc 204 kt+ a+l++ + PIN15052.1 361 KTTIAALKYIR 371 *******9865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 827 aa Download sequence |
MAMVAQHHRE GSSGSISKHL DAGKYVRYTA EQVEALERVY SECPKPSSLR RQQLIRECPI 60 LSNIEPKQIK VWFQNRRCRE KQRKESTRLQ SVNRKLTAMN KLLMEENDRL QKQVSQLVCE 120 NGYMRQQLRT APPTADASCE SAVTTPQQSL RDANANNPAG LLSIAEETLA EFLSKATGTA 180 VDWVQMPGMK PGPGSVGIFA IAQSCSGVAA RACGLVSLEP TKIAEILKDR PSWFRDCRSL 240 EVFTMFPAGN GGTIELLYTQ AYAPTTLAPA RDFWTLRYTT TLENSSLVVC ERSLSGTGAG 300 PNAAAASQFV RAEMLPSGYL IRPCEGGGSI IHIVDHLNLE AWSVPEVLRP LYESSKVVAQ 360 KTTIAALKYI RQIAQETSGE VVYSLGRQPA VLRTFSQRLS RGFNDAVNGF NDEGWSILSC 420 DGAEDVIVAI NSAKNPISGS NTLSMLGGIL CAKASMLLQN VPPAVLVRFL REHRSEWADF 480 NVDAYAAASL KNTYAYPGMR PTRFTGSQTI MPLGHTIEHE EMLEIIRLEG HSLSHEDAFM 540 SRDIHLLQMC SGIDENAVGA CSELVFAPID EMFPDDAQLL PSGFRIIPLD SKPDSHETLD 600 LTSSLESNNG KNAAASCSAR AILTIAFQFP FESNLRDNVA TMARQYVRSV ISSVQRVAMA 660 ISPSGLSPTV GSKLSPASPE ALTLAHWICQ SYSYHAGVDL LRADSTSGES LLKTLWHHQD 720 AILCCSLKAV PVFTFANQAG LDMLETTLVA LQDITLDKIF DDTGRKALFS EFAKIMQQGF 780 THMPGGICLS TMGRHVSYEQ AIVWKVFAAE ENTVHCLAFS FINWSFV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |