PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN12105.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 217aa MW: 25243.6 Da PI: 6.1684 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.2 | 1.8e-20 | 62 | 114 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eql Le+ F +++++ ae++ +LA++lgL+ rqV vWFqNrRa++k PIN12105.1 62 KRKLSEEQLSLLENSFGSEHKLEAERKDRLAAELGLDPRQVAVWFQNRRARWK 114 45899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 115 | 4.5e-37 | 61 | 152 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eq++lLE+sF +e+kLe erK +la eLgl+prqvavWFqnrRAR+k+k+l+++y++Lk+++++ + e++rLe+e +L+e+l+e PIN12105.1 61 RKRKLSEEQLSLLENSFGSEHKLEAERKDRLAAELGLDPRQVAVWFQNRRARWKSKRLDEEYSKLKSEHETTVVEKCRLETELLKLKEQLHE 152 8****************************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence |
MNSEVTDNQT VLISQYYPVG IISQLMPEQA VAAAAAATMK PRRRRRKNKE NEGGGDGLLM 60 RKRKLSEEQL SLLENSFGSE HKLEAERKDR LAAELGLDPR QVAVWFQNRR ARWKSKRLDE 120 EYSKLKSEHE TTVVEKCRLE TELLKLKEQL HEAKKEIQRL SERWDGIMSN SPSSCLSMET 180 MEPPFLGEFE IGGLENFFYP PETNYVHGFE WDNLYYI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 42 | 64 | RRRRRKNKENEGGGDGLLMRKRK |
2 | 43 | 65 | RRRRRKNKENEGGGDGLLMRKRK |
3 | 44 | 66 | RRRRRKNKENEGGGDGLLMRKRK |
4 | 45 | 67 | RRRRRKNKENEGGGDGLLMRKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18550.1 | 2e-45 | HD-ZIP family protein |