PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G18550.1 | ||||||||
Common Name | ATHB21, ATHB-21, F24H14.10, HB-2, HB21 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 220aa MW: 25700.7 Da PI: 5.1011 | ||||||||
Description | homeobox protein 21 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.1 | 8.2e-20 | 62 | 115 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ AT2G18550.1 62 KRKLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 115 45899***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 122.4 | 2.2e-39 | 61 | 152 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eqv++LE sFe ++kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k++E +y++Lk+ay++ + e++rL++ev +L+e+l e AT2G18550.1 61 RKRKLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRVEDEYTKLKNAYETTVVEKCRLDSEVIHLKEQLYE 152 8***************************************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.022 | 56 | 116 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.28E-18 | 59 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.0E-20 | 59 | 120 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.56E-17 | 61 | 117 | No hit | No description |
Pfam | PF00046 | 4.9E-17 | 62 | 115 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 63 | 122 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.4E-5 | 87 | 96 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 91 | 114 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.4E-5 | 96 | 112 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MNNQNVDDHN LLLISQLYPN VYTPLVPQQG GEAKPTRRRK RKSKSVVVAE EGENEGNGWF 60 RKRKLSDEQV RMLEISFEDD HKLESERKDR LASELGLDPR QVAVWFQNRR ARWKNKRVED 120 EYTKLKNAYE TTVVEKCRLD SEVIHLKEQL YEAEREIQRL AKRVEGTLSN SPISSSVTIE 180 ANHTTPFFGD YDIGFDGEAD ENLLYSPDYI DGLDWMSQFM |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.52810 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 265983_at | 0.0 | ||||
Expression Atlas | AT2G18550 | - | ||||
AtGenExpress | AT2G18550 | - | ||||
ATTED-II | AT2G18550 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G18550.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Regulation -- Hormone ? help Back to Top | ||||||
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Source | Hormone | |||||
AHD | Brassinosteroid |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT2G36610, AT3G19290, AT5G65410, AT1G69600 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G18550 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT031362 | 0.0 | BT031362.1 Arabidopsis thaliana unknown protein (At2g18550) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_179445.1 | 1e-164 | homeobox protein 21 | ||||
Swissprot | Q9ZU70 | 1e-165 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | C0SV50 | 1e-162 | C0SV50_ARATH; Uncharacterized protein At2g18550 (Fragment) | ||||
STRING | AT2G18550.1 | 1e-163 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2208 | 26 | 77 | Representative plant | OGRP3776 | 10 | 25 |
Link Out ? help Back to Top | |
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Phytozome | AT2G18550.1 |
Entrez Gene | 816370 |
iHOP | AT2G18550 |
wikigenes | AT2G18550 |