PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN11440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 182aa MW: 20676.7 Da PI: 9.7916 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.5 | 4.2e-14 | 11 | 53 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i +++ r tf kR++g++KK +EL +LC++e++ i++s +g+ PIN11440.1 11 IADERTRRETFRKRKTGLFKKLSELKTLCEVEACGIVISGDGT 53 778899999******************************9997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence |
MVRSKIKYEL IADERTRRET FRKRKTGLFK KLSELKTLCE VEACGIVISG DGTQAEVWPS 60 PNAASQVIQK FINLPTSSQT NNMIDQAGFL RANLSRYSKN LDKESKKIES MERELRLAEC 120 LTKEEVVTRN TDELHEILRL LERKIGMVDR RIAKIEPSSS NMAASAQQTN NEPDHGKGKQ 180 PV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 3e-19 | M-type_MADS family protein |