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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PIN08794.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 299aa MW: 34181.6 Da PI: 4.5257 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 59.6 | 4.9e-19 | 58 | 111 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k
PIN08794.1 58 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 111
566899***********************************************9 PP
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| 2 | HD-ZIP_I/II | 128.3 | 3.2e-41 | 57 | 149 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++yd lk + e+L++++e+L +e++e
PIN08794.1 57 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDGLKLNFEKLQHDKESLLKEIQE 149
69*************************************************************************************999986 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 299 aa Download sequence |
MKRLGSSDSL GALMSICPNS TDEHNQGNNP IYTREFQNML EGLDEEGCVE ELGQVSEKKR 60 RLSVDQVKAL EKNFEVENKL EPERKVKLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDYG 120 VLKANYDGLK LNFEKLQHDK ESLLKEIQEL RSKLNEANKS EVKLEAPDNS LDKHEEDPNE 180 LNFEDLNGNK DGDQEILGDG LLFTDLKDGS SDSDSSAILN DENNNSPHQF LNNGSTSISF 240 KFSSSSSSDP KVKTLLGEAH KDYHSQFVKI EEHDFLGEDF FSDDQAPTLH WYCNPDEWN |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 58 | 87 | KKRRLSVDQVKALEKNFEVENKLEPERKVK |
| 2 | 106 | 114 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT4G40060.1 | 3e-66 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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