PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN06126.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C2H2

Protein Properties

Length: 481aa MW: 53903.2 Da PI: 9.6524

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN06126.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0012	45	68	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 + C+ C ksF++ L H++t H PIN06126.1 45 HYCKECRKSFNSGKALGGHLSTaH 68 68**************99999988 PP
2	zf-C2H2	17.9	8.4e-06	99	119	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cg+ F+++ L H+r+H PIN06126.1 99 CVICGREFPSRKALFGHMRSH 119 ********************9 PP
3	zf-C2H2	17.9	8.4e-06	193	213	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cg+ F+++ L H+r+H PIN06126.1 193 CVICGREFPSRKALFGHMRSH 213 ********************9 PP
4	zf-C2H2	15	6.9e-05	431	453	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C++sFs+ L +H r+H PIN06126.1 431 YICTICHMSFSSGQALGSHKRSH 453 89*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MEGEDKEFNS QNPNQGTFLV RFKFNRMPEK TVETEPAPLP KKENHYCKEC RKSFNSGKAL 60 GGHLSTAHVQ SKKDYSFVKL NFNGKRGHNS LGSPAGKYCV ICGREFPSRK ALFGHMRSHP 120 ERQWRGMDPP PAELESSDDD GSSSTECRRR RWRQSRRRCR KKRTIIKDYS FVKLNFNGKR 180 GHNSLGSPAG KYCVICGREF PSRKALFGHM RSHPERQWRG MDPPPSELES SDDDSSPSSE 240 VAAPSPVADI ASSLKGWCVT AKRGRPEISK PSPATADPLP IKDSDMFNNV VQKLVKFMEN 300 QSAKQDNEVE DVGSSSLVDD NHQFKKRKTE SAIDVAEVKL TEAGSKAEAE SRAEAETKAA 360 AENIVQGNCG TSPKQNYVCT TCNRSFHSHQ ALGGHKSSHN KFKISIINAI DDDLNGNNKN 420 NNRSRRQPGS YICTICHMSF SSGQALGSHK RSHKEEDEKK KKNKTARVEF EIDLNKLPDE 480 E

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MEGEDKEFNS QNPNQGTFLV RFKFNRMPEK TVETEPAPLP KKENHYCKEC RKSFNSGKAL  60
GGHLSTAHVQ SKKDYSFVKL NFNGKRGHNS LGSPAGKYCV ICGREFPSRK ALFGHMRSHP  120
ERQWRGMDPP PAELESSDDD GSSSTECRRR RWRQSRRRCR KKRTIIKDYS FVKLNFNGKR  180
GHNSLGSPAG KYCVICGREF PSRKALFGHM RSHPERQWRG MDPPPSELES SDDDSSPSSE  240
VAAPSPVADI ASSLKGWCVT AKRGRPEISK PSPATADPLP IKDSDMFNNV VQKLVKFMEN  300
QSAKQDNEVE DVGSSSLVDD NHQFKKRKTE SAIDVAEVKL TEAGSKAEAE SRAEAETKAA  360
AENIVQGNCG TSPKQNYVCT TCNRSFHSHQ ALGGHKSSHN KFKISIINAI DDDLNGNNKN  420
NNRSRRQPGS YICTICHMSF SSGQALGSHK RSHKEEDEKK KKNKTARVEF EIDLNKLPDE  480
E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	163	RRRRWRQSRRRCRKKR
2	149	164	RRRRWRQSRRRCRKKR
3	149	162	RRRWRQSRRRCRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	1e-16	C2H2 family protein