PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN01853.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C2H2

Protein Properties

Length: 517aa MW: 53645 Da PI: 8.0923

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN01853.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	53	75	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PIN01853.1 53 FVCEICNKGFQRDQNLQLHRRGH 75 89*******************88 PP
2	zf-C2H2	11.2	0.0012	129	151	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + PIN01853.1 129 WKCDKCSKKYAVQSDWKAHSKIC 151 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence
MNDSTVSGDS SSGNQTAPPK PTAKKKRNLP GMPDPDAEVI VLSPKTLLAT NRFVCEICNK 60 GFQRDQNLQL HRRGHNLPWK LRQRSSKDVK KRVYVCPEPS CVHHDPSRAL GDLTGIKKHF 120 CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTREYKCDC GTLFSRRDSF ITHRAFCDAL 180 AEESAKTQTL VAPPSSEEDK NAEAAEPSPP QSPPQVAAAA AMEAPAPPPP QTAPAPPPPQ 240 TAPPPAPPST AVVSAVQTTD LLESTSTNPT TTQIIDETPS VTNLATSCSS SSSSSNGSSS 300 SNVFASLFAS STSSGSLHSQ TTGFTDWFRA IAHPDCTPDV PPSSSSEPVS LGLAMNQGSS 360 IFGTAGQERR QYAPAPQPAM SATALLQKAA QIGAAASNAS LLRGLGIVSS SSSPNGPQEW 420 SGQQLEPNGS SLAAGLGLGL ACDGGSGLKE LMLGTPSVFG PKHTTLDLLG LGMAASGGST 480 GGLSALMTSI NGGLDVAAAA PPFGTGEYGS KDIGRSS

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence

MNDSTVSGDS SSGNQTAPPK PTAKKKRNLP GMPDPDAEVI VLSPKTLLAT NRFVCEICNK  60
GFQRDQNLQL HRRGHNLPWK LRQRSSKDVK KRVYVCPEPS CVHHDPSRAL GDLTGIKKHF  120
CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTREYKCDC GTLFSRRDSF ITHRAFCDAL  180
AEESAKTQTL VAPPSSEEDK NAEAAEPSPP QSPPQVAAAA AMEAPAPPPP QTAPAPPPPQ  240
TAPPPAPPST AVVSAVQTTD LLESTSTNPT TTQIIDETPS VTNLATSCSS SSSSSNGSSS  300
SNVFASLFAS STSSGSLHSQ TTGFTDWFRA IAHPDCTPDV PPSSSSEPVS LGLAMNQGSS  360
IFGTAGQERR QYAPAPQPAM SATALLQKAA QIGAAASNAS LLRGLGIVSS SSSPNGPQEW  420
SGQQLEPNGS SLAAGLGLGL ACDGGSGLKE LMLGTPSVFG PKHTTLDLLG LGMAASGGST  480
GGLSALMTSI NGGLDVAAAA PPFGTGEYGS KDIGRSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-107	C2H2 family protein