PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN01103.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C2H2

Protein Properties

Length: 542aa MW: 60645.2 Da PI: 6.2135

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN01103.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0016	9	31	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C+ks+ + +L H+r+H PIN01103.1 9 YLCKICNKSCVSGKSLGGHMRVH 31 56*******************99 PP
2	zf-C2H2	15.9	3.7e-05	122	143	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F++ + H+r+H PIN01103.1 122 SCKECGKEFPSLRAFSGHMRSH 143 6********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MGEVQEQRYL CKICNKSCVS GKSLGGHMRV HLSQIAASKK AKAEIKVEFN GGNDQDGSIQ 60 LKETSKNQSN SAPLILEMSK NWEKNMGSGD VDQNNSYELR ENPKKSWRIS NPKHGVMKNG 120 ASCKECGKEF PSLRAFSGHM RSHSIKNKKL HLCKTCGKGF DSMRAMFGHM KSHSKKLLVP 180 DDSADSLSDL ENLCPIRRKR SRIRYKSTSN PSCSSLNDSN CDVCEVEDVE EVAVCLMMLS 240 RGVKNWIKSD SVQEPESSDD GSVYFGAESS CKSKKFAVDD DDFVCHVEKK MKMSLSTGNL 300 EKNVCEFDDL DLEDEMKVDL QVSDDEQPTV SKLVESEPLN EFAVDLDCAN DLRSSVSIKL 360 AELFNSNSCK MGSSCVHESD SKKKLSENKA KDLEILKDFE EEDEIFQSHS KLGGRKMQEN 420 SMHFNLLSFS EADSKLDQIE YGDSQLEQKS LGVGTVNVET NKRKEHSCPI CFKVFPSGRA 480 LGGHKRAHYT RCNESKIEAK AVNQEFDLNF PVAVDEGTAG EVGLNLWWAE RNREHETLVL 540 TN

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MGEVQEQRYL CKICNKSCVS GKSLGGHMRV HLSQIAASKK AKAEIKVEFN GGNDQDGSIQ  60
LKETSKNQSN SAPLILEMSK NWEKNMGSGD VDQNNSYELR ENPKKSWRIS NPKHGVMKNG  120
ASCKECGKEF PSLRAFSGHM RSHSIKNKKL HLCKTCGKGF DSMRAMFGHM KSHSKKLLVP  180
DDSADSLSDL ENLCPIRRKR SRIRYKSTSN PSCSSLNDSN CDVCEVEDVE EVAVCLMMLS  240
RGVKNWIKSD SVQEPESSDD GSVYFGAESS CKSKKFAVDD DDFVCHVEKK MKMSLSTGNL  300
EKNVCEFDDL DLEDEMKVDL QVSDDEQPTV SKLVESEPLN EFAVDLDCAN DLRSSVSIKL  360
AELFNSNSCK MGSSCVHESD SKKKLSENKA KDLEILKDFE EEDEIFQSHS KLGGRKMQEN  420
SMHFNLLSFS EADSKLDQIE YGDSQLEQKS LGVGTVNVET NKRKEHSCPI CFKVFPSGRA  480
LGGHKRAHYT RCNESKIEAK AVNQEFDLNF PVAVDEGTAG EVGLNLWWAE RNREHETLVL  540
TN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	2e-11	C2H2 family protein