PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PIM97744.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 247aa MW: 27667.7 Da PI: 8.4452 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.6 | 6.9e-18 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r+ ++ kR++g++KKA EL +LC++e++vii+s+ PIM97744.1 11 ITNNSERKASYKKRKKGLIKKATELTTLCGVEACVIIYSE 50 89*************************************8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 247 aa Download sequence |
MTRKKVTLAY ITNNSERKAS YKKRKKGLIK KATELTTLCG VEACVIIYSE YDAEPEVWPS 60 RPVAEAVLAW FNSLPEMERT RKMVNRESLT RQQIRKAQDQ LRRIQKENKR KELEIFMFQC 120 LAGKMGFEGF DLRDAAEMGW VVNQIVKNID SRMAALRRNG EAAAAAEAEV VAPPQATVGM 180 VDARAAVEVV VPPVGEENME SFPWNLVESP TGRGLGWDDG MVLPYPYIFE HANASTSAEP 240 KFGHGAS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 3 | 25 | RKKVTLAYITNNSERKASYKKRK |
2 | 22 | 26 | KKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-45 | M-type_MADS family protein |