PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIM97668.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | GRAS | ||||||||
Protein Properties | Length: 508aa MW: 56791.7 Da PI: 7.1189 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 284.2 | 3.7e-87 | 145 | 506 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 Ll+cAe v++++ +a +lL + +++sp g+++qRla+yf eAL +++ r +++ + l p e+ + l ++++ P+++++ ++ q+ PIM97668.1 145 VNLLSCAEKVDKEQYDRAGKLLDECYKMSSPIGSTIQRLAFYFIEALYEKVGRVTPKGM-CLDPLEA----IIWPSIPLLALHKEHPLPQITKFAGIQT 238 579**************************************************443333.2333333....34444444569999************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 Il+ v +++++H+iD++i G+Q+ L+qaL +R++ p +lRiT++g +ske++eetg+rL +fAe+l+++f+f+v+++ ++ dl+ + ++v pg PIM97668.1 239 ILDHVVEARKIHVIDLEIRSGIQYTILFQALVDRSKHPVeHLRITALGT---KSKETMEETGKRLMSFAESLKISFSFDVVMVADVLDLKESLFKVVPG 334 ***********************************66655*********...68********************************************* PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 E++aV +++l+ l + +++++++k+l+P v++++e ea+++s+sF rf+e+l +y a+fds+++ + +++ +r+ vE+ +lg +i+nv+ PIM97668.1 335 ETVAVYAAYALMGLGGKADR----LERIMRVIKDLNPCVMIIAEIEANCSSPSFIGRFVESLFFYGAIFDSFAECMKNDETNRREVEATCLGSSIKNVL 429 **************955555....555************************************************************************ PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 a+eg+er+ rh + + Wr+ l ++G +++ls + ++qa+++l+ ++ ++ +v+ + ++l++ Wk+ pL s+SaW+ PIM97668.1 430 AAEGDERKIRHMSIRVWRAFLARFGIVEIELSMSCVDQAHMVLQGFPcGRSCTVDMNGKCLIIAWKGTPLSSLSAWK 506 ************************************************9***************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence |
MPTNAENGND KFISQGTNSP GVQELESFAT FCNLDDLYLG VISHQFQSFD DKIISVKPSN 60 TKEDYSASFH ILRKHKRKCP KLDENKAIVS SQNSIIPTLS TEAIIELAAE NFIQSASKSR 120 KELSVLNHPY SSSPLSHSKD VQLIVNLLSC AEKVDKEQYD RAGKLLDECY KMSSPIGSTI 180 QRLAFYFIEA LYEKVGRVTP KGMCLDPLEA IIWPSIPLLA LHKEHPLPQI TKFAGIQTIL 240 DHVVEARKIH VIDLEIRSGI QYTILFQALV DRSKHPVEHL RITALGTKSK ETMEETGKRL 300 MSFAESLKIS FSFDVVMVAD VLDLKESLFK VVPGETVAVY AAYALMGLGG KADRLERIMR 360 VIKDLNPCVM IIAEIEANCS SPSFIGRFVE SLFFYGAIFD SFAECMKNDE TNRREVEATC 420 LGSSIKNVLA AEGDERKIRH MSIRVWRAFL ARFGIVEIEL SMSCVDQAHM VLQGFPCGRS 480 CTVDMNGKCL IIAWKGTPLS SLSAWKFK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 3e-53 | GRAS family protein |