PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021690526.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | LBD | ||||||||
Protein Properties | Length: 238aa MW: 26218.6 Da PI: 6.9831 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.7 | 2.4e-30 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +PvyG+vg+++++++ +q+ XP_021690526.1 4 SCNGCRVLRKGCSDDCNIRPCLqwiksPDSQANATLFLAKFYGRAGLINLIEAGPPHLRPAVFRSLLYEACGRIVNPVYGSVGLLWSGNWAHCQA 98 6********************************************************************************************** PP DUF260 91 kaelallke 99 +++++l+++ XP_021690526.1 99 AVDAVLRGT 107 *99988765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence |
MRMSCNGCRV LRKGCSDDCN IRPCLQWIKS PDSQANATLF LAKFYGRAGL INLIEAGPPH 60 LRPAVFRSLL YEACGRIVNP VYGSVGLLWS GNWAHCQAAV DAVLRGTPIM QMPSAPDSPP 120 PHLIDPLKTY DIRHVSKDPN SLELNXIKNR TRFKGSVSNP SSPSEALCRV NHGELSFEQL 180 REPWLSQLAN GDSSRDDVSM FSVETVEDEP NRALKFNNLS DNGDEVGLDL TLGLVPVK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 1e-82 | LBD family protein |