PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021686170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 211aa MW: 24270.6 Da PI: 9.7833 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.3 | 1e-18 | 15 | 61 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 krien+ r + fskRr gi KKA+EL +LC+aev v++fs+ gk + XP_021686170.1 15 KRIENEDDRLIAFSKRRSGIYKKASELVTLCGAEVGVLVFSPAGKPF 61 79*****************************************9855 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence |
MAGKQTKGRQ KITMKRIENE DDRLIAFSKR RSGIYKKASE LVTLCGAEVG VLVFSPAGKP 60 FSFGQPSIES MANRFLENPP PKDNTYPLVE AHRKMRIDEL NQQYSEMLSQ LEAEKERGNM 120 LKQMMIRGKG RRQQQQQQQS YWWEAPVDEL NFQELHQMNF VLEELHSNLC RKINGPLSSR 180 NPIFASNNAN LQNDPAASSF PHGCGYGRRY F |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-42 | M-type_MADS family protein |