PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_021683528.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 302aa MW: 33335.9 Da PI: 4.9735 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 58.2 | 1.8e-18 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++ +v++ ++fdfl +iv r XP_021683528.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMSALHLKHCVQSYNVFDFLREIVSR 86 5789*************************************************************************9987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 302 aa Download sequence |
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMSALHLKHC VQSYNVFDFL REIVSRVPDY GHGHADNAAD HRTLQKRKPI VDECNDSDEE 120 LKRSKMHEMS HAGSSGRGRG RGRGRGRGRG ARNVEREPSH HEIESEPSTT LQQNIKNNSN 180 PGMVVDNGSD QKELLKEDMV VSDVANASER NFDLNADVNE NEDTKAAAAA AAVAAATATA 240 TTITAATTVV DNSSSVPTTE TNHEEYPGWS LSEMDKMAID PLQLAQFGTR IDEEEEDYDE 300 EG |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 137 | 146 | RGRGRGRGRG |
2 | 137 | 147 | RGRGRGRGRGR |
3 | 139 | 148 | RGRGRGRGRG |
4 | 139 | 149 | RGRGRGRGRGR |
5 | 141 | 150 | RGRGRGRGRG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12480.1 | 4e-72 | NF-YC family protein |