PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021678924.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

ARF

Protein Properties

Length: 1115aa MW: 124457 Da PI: 6.4782

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021678924.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.7	4.5e-23	123	224	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_021678924.1 123 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSMQPPA-QELVARDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEK 214 99***************************9445444.48**********************************************..4567 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l+++++r+ XP_021678924.1 215 SQLLLGIRRA 224 7789999997 PP
2	Auxin_resp	123.2	1.9e-40	249	331	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka++++vs+GmRf+m+fete+s rr++Gt++g+sdldpvrW+ S+Wr+L+ XP_021678924.1 249 AAHAAANNSPFTVFYNPRASPSEFVIPFSKYTKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKTSQWRNLQ 331 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1115 aa Download sequence
MKVPPNGFMA NSAEGERKNI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE 60 TDFIPSYPNL PSKLICMLHN VTLHADAETD EVYAQMTLQP YEKEALMASD MGLKQNRQPT 120 EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP SLDFSMQPPA QELVARDLHD NTWTFRHIYR 180 GQPKRHLLTT GWSVFVSTKR LFAGDSVLFI RDEKSQLLLG IRRANRQQPA LSSSVISSDS 240 MHIGILAAAA HAAANNSPFT VFYNPRASPS EFVIPFSKYT KAMYTQVSLG MRFRMMFETE 300 ESGVRRYMGT ITGISDLDPV RWKTSQWRNL QVGWDESTAG ERPSRVSLWE IEPIVTPFYI 360 CPPPFFRPKF PKPPGMPDDE SDTENAFKRA MPWLGDDFGV KDTPSSIFPG LSLVQWMSMQ 420 QNNQFPAAQA GFFPTMLPSN ALHNNLSADD PSKLLNFQAP GLSMPGLHFN KANPQNQVSQ 480 LPQSSAWTQQ QQLQQLLQTN INQQQSSHPQ QQQQQPHPQQ QQQRQQPQPP QQQQLNQQQQ 540 PQSQPQPQPQ SQPQPPQLQL QQQQQIFQPP VNNGVVTPNQ ISNQTLQQPL VYSQLQQQQQ 600 LLASNTQSQN ISSANKSSYQ LTSLPQDTPF QQQMEQQSSL LQRHQQQTQL QQSPLQLLQQ 660 NVAQITQQQP HPQPQQLSQP GLSEQQLHLQ LLQKLQQQQQ QQLLSPTSSP LQSQLLQQQQ 720 THQQNQQFQQ LPLSQSQQQP LGSNSFSTAA LMQSQSFPAS QSHGLQKSPT TIRPHSTLTD 780 ADAPSCSTSP STNNCQISPS NFLNRNQQTP AILMGDPVIE PANNLVQELN SKSDTRVKHE 840 FPSSKGSDQL KYKSTITDQL EASSSGTSYC LDAGNIQPNF SLPTFGLDGD VQSHPRNSLP 900 FATNIDNLAP DTLLSRGYDS QKDLQNLLTN YGGTPRDIET ELSTAAISSQ SFGVPNIPFK 960 PGCSNDVPIN DSGVLNGGLW ANQTQRMRTY TKVQKRGSVG RSIDVTRYKG YDELRHDLAR 1020 MFGIEGQLED PQSSDWKLVY VDHENDILLV GDDPWEEFVS CVQSIKILSS AEVQQMSLDG 1080 DLGSLPVPKQ ACSGTNSGNA WRGHYDDNSA ASFNR

Sequence ? help Back to Top

Protein Sequence Length: 1115 aa Download sequence

MKVPPNGFMA NSAEGERKNI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TDFIPSYPNL PSKLICMLHN VTLHADAETD EVYAQMTLQP YEKEALMASD MGLKQNRQPT  120
EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP SLDFSMQPPA QELVARDLHD NTWTFRHIYR  180
GQPKRHLLTT GWSVFVSTKR LFAGDSVLFI RDEKSQLLLG IRRANRQQPA LSSSVISSDS  240
MHIGILAAAA HAAANNSPFT VFYNPRASPS EFVIPFSKYT KAMYTQVSLG MRFRMMFETE  300
ESGVRRYMGT ITGISDLDPV RWKTSQWRNL QVGWDESTAG ERPSRVSLWE IEPIVTPFYI  360
CPPPFFRPKF PKPPGMPDDE SDTENAFKRA MPWLGDDFGV KDTPSSIFPG LSLVQWMSMQ  420
QNNQFPAAQA GFFPTMLPSN ALHNNLSADD PSKLLNFQAP GLSMPGLHFN KANPQNQVSQ  480
LPQSSAWTQQ QQLQQLLQTN INQQQSSHPQ QQQQQPHPQQ QQQRQQPQPP QQQQLNQQQQ  540
PQSQPQPQPQ SQPQPPQLQL QQQQQIFQPP VNNGVVTPNQ ISNQTLQQPL VYSQLQQQQQ  600
LLASNTQSQN ISSANKSSYQ LTSLPQDTPF QQQMEQQSSL LQRHQQQTQL QQSPLQLLQQ  660
NVAQITQQQP HPQPQQLSQP GLSEQQLHLQ LLQKLQQQQQ QQLLSPTSSP LQSQLLQQQQ  720
THQQNQQFQQ LPLSQSQQQP LGSNSFSTAA LMQSQSFPAS QSHGLQKSPT TIRPHSTLTD  780
ADAPSCSTSP STNNCQISPS NFLNRNQQTP AILMGDPVIE PANNLVQELN SKSDTRVKHE  840
FPSSKGSDQL KYKSTITDQL EASSSGTSYC LDAGNIQPNF SLPTFGLDGD VQSHPRNSLP  900
FATNIDNLAP DTLLSRGYDS QKDLQNLLTN YGGTPRDIET ELSTAAISSQ SFGVPNIPFK  960
PGCSNDVPIN DSGVLNGGLW ANQTQRMRTY TKVQKRGSVG RSIDVTRYKG YDELRHDLAR  1020
MFGIEGQLED PQSSDWKLVY VDHENDILLV GDDPWEEFVS CVQSIKILSS AEVQQMSLDG  1080
DLGSLPVPKQ ACSGTNSGNA WRGHYDDNSA ASFNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein