PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021678923.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

ARF

Protein Properties

Length: 1118aa MW: 124771 Da PI: 6.5437

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021678923.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.7	4.5e-23	126	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_021678923.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSMQPPA-QELVARDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEK 217 99***************************9445444.48**********************************************..4567 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l+++++r+ XP_021678923.1 218 SQLLLGIRRA 227 7789999997 PP
2	Auxin_resp	123.2	1.9e-40	252	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka++++vs+GmRf+m+fete+s rr++Gt++g+sdldpvrW+ S+Wr+L+ XP_021678923.1 252 AAHAAANNSPFTVFYNPRASPSEFVIPFSKYTKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKTSQWRNLQ 334 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1118 aa Download sequence
MKVPPNGFMA NSAEGERKNI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE 60 TDFIPSYPNL PSKLICMLHN VTLHADAETD EVYAQMTLQP VSKYEKEALM ASDMGLKQNR 120 QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPSLDFSMQ PPAQELVARD LHDNTWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS 240 SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPFS KYTKAMYTQV SLGMRFRMMF 300 ETEESGVRRY MGTITGISDL DPVRWKTSQW RNLQVGWDES TAGERPSRVS LWEIEPIVTP 360 FYICPPPFFR PKFPKPPGMP DDESDTENAF KRAMPWLGDD FGVKDTPSSI FPGLSLVQWM 420 SMQQNNQFPA AQAGFFPTML PSNALHNNLS ADDPSKLLNF QAPGLSMPGL HFNKANPQNQ 480 VSQLPQSSAW TQQQQLQQLL QTNINQQQSS HPQQQQQQPH PQQQQQRQQP QPPQQQQLNQ 540 QQQPQSQPQP QPQSQPQPPQ LQLQQQQQIF QPPVNNGVVT PNQISNQTLQ QPLVYSQLQQ 600 QQQLLASNTQ SQNISSANKS SYQLTSLPQD TPFQQQMEQQ SSLLQRHQQQ TQLQQSPLQL 660 LQQNVAQITQ QQPHPQPQQL SQPGLSEQQL HLQLLQKLQQ QQQQQLLSPT SSPLQSQLLQ 720 QQQTHQQNQQ FQQLPLSQSQ QQPLGSNSFS TAALMQSQSF PASQSHGLQK SPTTIRPHST 780 LTDADAPSCS TSPSTNNCQI SPSNFLNRNQ QTPAILMGDP VIEPANNLVQ ELNSKSDTRV 840 KHEFPSSKGS DQLKYKSTIT DQLEASSSGT SYCLDAGNIQ PNFSLPTFGL DGDVQSHPRN 900 SLPFATNIDN LAPDTLLSRG YDSQKDLQNL LTNYGGTPRD IETELSTAAI SSQSFGVPNI 960 PFKPGCSNDV PINDSGVLNG GLWANQTQRM RTYTKVQKRG SVGRSIDVTR YKGYDELRHD 1020 LARMFGIEGQ LEDPQSSDWK LVYVDHENDI LLVGDDPWEE FVSCVQSIKI LSSAEVQQMS 1080 LDGDLGSLPV PKQACSGTNS GNAWRGHYDD NSAASFNR

Sequence ? help Back to Top

Protein Sequence Length: 1118 aa Download sequence

MKVPPNGFMA NSAEGERKNI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TDFIPSYPNL PSKLICMLHN VTLHADAETD EVYAQMTLQP VSKYEKEALM ASDMGLKQNR  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPSLDFSMQ PPAQELVARD LHDNTWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPFS KYTKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDL DPVRWKTSQW RNLQVGWDES TAGERPSRVS LWEIEPIVTP  360
FYICPPPFFR PKFPKPPGMP DDESDTENAF KRAMPWLGDD FGVKDTPSSI FPGLSLVQWM  420
SMQQNNQFPA AQAGFFPTML PSNALHNNLS ADDPSKLLNF QAPGLSMPGL HFNKANPQNQ  480
VSQLPQSSAW TQQQQLQQLL QTNINQQQSS HPQQQQQQPH PQQQQQRQQP QPPQQQQLNQ  540
QQQPQSQPQP QPQSQPQPPQ LQLQQQQQIF QPPVNNGVVT PNQISNQTLQ QPLVYSQLQQ  600
QQQLLASNTQ SQNISSANKS SYQLTSLPQD TPFQQQMEQQ SSLLQRHQQQ TQLQQSPLQL  660
LQQNVAQITQ QQPHPQPQQL SQPGLSEQQL HLQLLQKLQQ QQQQQLLSPT SSPLQSQLLQ  720
QQQTHQQNQQ FQQLPLSQSQ QQPLGSNSFS TAALMQSQSF PASQSHGLQK SPTTIRPHST  780
LTDADAPSCS TSPSTNNCQI SPSNFLNRNQ QTPAILMGDP VIEPANNLVQ ELNSKSDTRV  840
KHEFPSSKGS DQLKYKSTIT DQLEASSSGT SYCLDAGNIQ PNFSLPTFGL DGDVQSHPRN  900
SLPFATNIDN LAPDTLLSRG YDSQKDLQNL LTNYGGTPRD IETELSTAAI SSQSFGVPNI  960
PFKPGCSNDV PINDSGVLNG GLWANQTQRM RTYTKVQKRG SVGRSIDVTR YKGYDELRHD  1020
LARMFGIEGQ LEDPQSSDWK LVYVDHENDI LLVGDDPWEE FVSCVQSIKI LSSAEVQQMS  1080
LDGDLGSLPV PKQACSGTNS GNAWRGHYDD NSAASFNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein