PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021673050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | C3H | ||||||||
Protein Properties | Length: 432aa MW: 47783.6 Da PI: 9.2416 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 40.1 | 5.9e-13 | 10 | 35 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ XP_021673050.1 10 GQPECQYYLKTGTCKFGATCKFHHPK 35 5799********************96 PP | |||||||
2 | zf-CCCH | 36.8 | 6.6e-12 | 59 | 81 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C +++rtG+Ck+G++CkF+H++ XP_021673050.1 59 DCAYYLRTGQCKFGSTCKFHHPQ 81 7********************97 PP | |||||||
3 | zf-CCCH | 37.9 | 2.9e-12 | 215 | 241 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_021673050.1 215 PGQPECQFYMKTGDCKFGAVCRFHHPR 241 5789*********************96 PP | |||||||
4 | zf-CCCH | 39 | 1.3e-12 | 261 | 287 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G Ck+G++CkF H++ XP_021673050.1 261 PGEPLCIFYSRYGVCKFGPSCKFDHPM 287 589**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence |
MKGEFPERMG QPECQYYLKT GTCKFGATCK FHHPKDKAGI AGRVSLNILG YPLRPNEIDC 60 AYYLRTGQCK FGSTCKFHHP QPTNVMVPLR GSPIYPTVHS PTSPGQQSYA GGLTNWSRAS 120 FVTSPRWQVP SSYTPLILPQ GVVSVPRWNA YCGQLGSVSS PEGRQQTGNS QIYETSRQSE 180 LVNTVSQGAL SPFRSSSVPV GFYALQRENV FPERPGQPEC QFYMKTGDCK FGAVCRFHHP 240 RERLIPAPDC VLSPIGLPLR PGEPLCIFYS RYGVCKFGPS CKFDHPMGIF TYNLSASSSA 300 DPPVRRFLGP SSGSAAFTLS PEGLVEAGST KPRRLSLSEP RQMPSGSFLP KFVGEFDFNR 360 EAFGGSRMKW NVIAYCLLGW IIQGLHISQA MNNNIHGLPP TSTPGFCNKS LKYIRYQENI 420 IHDFIGHSLI SI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-145 | C3H family protein |