PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021673045.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 512aa MW: 56649.6 Da PI: 9.0848

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021673045.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.3	1.9e-11	44	70	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_021673045.1 44 PGEPDCSYYIRTGLCRFGATCRFNHPP 70 5789*********************97 PP
2	zf-CCCH	39.8	7.3e-13	90	115	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ XP_021673045.1 90 GQPECQYYLKTGTCKFGATCKFHHPK 115 5799********************96 PP
3	zf-CCCH	36.5	8.1e-12	139	161	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C +++rtG+Ck+G++CkF+H++ XP_021673045.1 139 DCAYYLRTGQCKFGSTCKFHHPQ 161 7********************97 PP
4	zf-CCCH	37.6	3.6e-12	295	321	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_021673045.1 295 PGQPECQFYMKTGDCKFGAVCRFHHPR 321 5789*********************96 PP
5	zf-CCCH	38.7	1.6e-12	341	367	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G Ck+G++CkF H++ XP_021673045.1 341 PGEPLCIFYSRYGVCKFGPSCKFDHPM 367 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MSRTGPPPVT EGPSLSPSLN EDAMWQMNLR SNETMESGPY PERPGEPDCS YYIRTGLCRF 60 GATCRFNHPP NRKLALAAAR MKGEFPERMG QPECQYYLKT GTCKFGATCK FHHPKDKAGI 120 AGRVSLNILG YPLRPNEIDC AYYLRTGQCK FGSTCKFHHP QPTNVMVPLR GSPIYPTVHS 180 PTSPGQQSYA GGLTNWSRAS FVTSPRWQVP SSYTPLILPQ GVVSVPRWNA YCGQLGSVSS 240 PEGRQQTGNS QIYETSRQSE LVNTVSQGAL SPFRSSSVPV GFYALQRENV FPERPGQPEC 300 QFYMKTGDCK FGAVCRFHHP RERLIPAPDC VLSPIGLPLR PGEPLCIFYS RYGVCKFGPS 360 CKFDHPMGIF TYNLSASSSA DPPVRRFLGP SSGSAAFTLS PEGLVEAGST KPRRLSLSEP 420 RQMPSGSFLP KFVGEFDFNR EAFGGSRMKW NVIAYCLLGW IIQGLHISQA MNNNIHGLPP 480 TSTPGFCNKS LKYIRYQENI IHDFIGHSLI SI

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MSRTGPPPVT EGPSLSPSLN EDAMWQMNLR SNETMESGPY PERPGEPDCS YYIRTGLCRF  60
GATCRFNHPP NRKLALAAAR MKGEFPERMG QPECQYYLKT GTCKFGATCK FHHPKDKAGI  120
AGRVSLNILG YPLRPNEIDC AYYLRTGQCK FGSTCKFHHP QPTNVMVPLR GSPIYPTVHS  180
PTSPGQQSYA GGLTNWSRAS FVTSPRWQVP SSYTPLILPQ GVVSVPRWNA YCGQLGSVSS  240
PEGRQQTGNS QIYETSRQSE LVNTVSQGAL SPFRSSSVPV GFYALQRENV FPERPGQPEC  300
QFYMKTGDCK FGAVCRFHHP RERLIPAPDC VLSPIGLPLR PGEPLCIFYS RYGVCKFGPS  360
CKFDHPMGIF TYNLSASSSA DPPVRRFLGP SSGSAAFTLS PEGLVEAGST KPRRLSLSEP  420
RQMPSGSFLP KFVGEFDFNR EAFGGSRMKW NVIAYCLLGW IIQGLHISQA MNNNIHGLPP  480
TSTPGFCNKS LKYIRYQENI IHDFIGHSLI SI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	0.0	C3H family protein