PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021669103.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 730aa MW: 79325.1 Da PI: 6.2078

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021669103.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.4e-07	306	326	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_021669103.1 306 PCPDFRK-GACRRGDMCEYAHG 326 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence
MCCGSERLKP TPSPTLPVIS FEDSRPTNVD MNHLTVETED TFASLLELAA NNDTEGFKRS 60 IECDPLCVDE TGLWYSRQKG PKQMVNQYRT PLMVAATYGS LDIIRLILSL SDADVNRTCG 120 LDKSTALHCA ASGGAVNAVD AVKLLLAAGA DPNLVDANGH RPIDVIVVPP KLQGVKFTLE 180 ELLATDGSVI ERNLRVSTPT SNSNSPPLSP SVENGSPLSA SDSPVKSKLN DAPVFSASEK 240 KEYPVDPSLP DIKNSIYSTD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF 300 HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGVSCAR RVCFFAHTVE 360 ELRPLYLSTG SAVPSPRSST SGATAMDFAA AMSLLPGSPS SVSVMSPSPF TPPMSPSTNG 420 MSHSSVSWPQ PNVPALHLPG SNLQSSRLRS SLNARDIPAE DYSLLPDFDV QQQQLLNELS 480 SLTQSSLSNN SLNRSGRLKV LTPSNLDDLF SAESSSPRYA DQALAAAVFS PTHKSAVLNQ 540 FQQQQSMLSP INTNFSPKNV DHPLLQASFA SGRMSPRNVE PISPMSSRVS MLAQREKQQQ 600 QLRSLSSREL GSNSAAIVGS PVNSWSKWGS SNGKPDWTVG TADELGKLRR SNSFELGNGE 660 EPDLSWVQSL IKESPNEIKE KLAMPVSTGI AASASSSEGL IMNSQIESVD QAVGAWIEQL 720 QIDQLVAQQN

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence

MCCGSERLKP TPSPTLPVIS FEDSRPTNVD MNHLTVETED TFASLLELAA NNDTEGFKRS  60
IECDPLCVDE TGLWYSRQKG PKQMVNQYRT PLMVAATYGS LDIIRLILSL SDADVNRTCG  120
LDKSTALHCA ASGGAVNAVD AVKLLLAAGA DPNLVDANGH RPIDVIVVPP KLQGVKFTLE  180
ELLATDGSVI ERNLRVSTPT SNSNSPPLSP SVENGSPLSA SDSPVKSKLN DAPVFSASEK  240
KEYPVDPSLP DIKNSIYSTD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF  300
HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGVSCAR RVCFFAHTVE  360
ELRPLYLSTG SAVPSPRSST SGATAMDFAA AMSLLPGSPS SVSVMSPSPF TPPMSPSTNG  420
MSHSSVSWPQ PNVPALHLPG SNLQSSRLRS SLNARDIPAE DYSLLPDFDV QQQQLLNELS  480
SLTQSSLSNN SLNRSGRLKV LTPSNLDDLF SAESSSPRYA DQALAAAVFS PTHKSAVLNQ  540
FQQQQSMLSP INTNFSPKNV DHPLLQASFA SGRMSPRNVE PISPMSSRVS MLAQREKQQQ  600
QLRSLSSREL GSNSAAIVGS PVNSWSKWGS SNGKPDWTVG TADELGKLRR SNSFELGNGE  660
EPDLSWVQSL IKESPNEIKE KLAMPVSTGI AASASSSEGL IMNSQIESVD QAVGAWIEQL  720
QIDQLVAQQN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein