PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021666258.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 701aa MW: 76371.9 Da PI: 5.8947

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021666258.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	278	298	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg XP_021666258.1 278 PCPEFRK-GSCRQGDACEYAHG 298 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MCSGSERKPT YTGFIMENKF QKQDGYCCNL SVLLELSASN DLIGFKREIE GGRDVDEPGL 60 WYGRRIGSKN MGFEERTPLM IAALLGSKDV LNYILEMGRV DVNRCCGSDG ATALHCAVAG 120 GSASSLEVVK LLLAASADHN AVDANGNHAI DLLVPVVNSG FNLRRKALEL VLKGGYTRDE 180 SCVLADLNPD EIDGQEQQEV STPILSKDGT EKKEYPVDLT LPDIKNGIFG TDEFRMYTFK 240 VKPCSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP EFRKGSCRQG DACEYAHGIF 300 ECWLHPAQYR TRLCKDETNC TRRVCFFAHK PEELRPLYAS TGSAVPSPRS FSANGSALDM 360 GSVSPLALGS PPVLIPPTSM TPSGSSSPMV GWPNQTSVVP PILQLPSSRL KSALSARDMD 420 VDMELLGLDS HHRRQQQLVN EIGFSSPSGW NNDLSTASAF AVSGDRTLEL NRLGGVKPTN 480 LEDIFGSHDP TILPQLQGLT VDSTVSQLQS QTGIQMCQNI NQKLRSSYPT NFSSSPVRTS 540 SFGFDPSGVA AAAVLNSRSA AFAKRSQSFI ERNAVNRHTG FSSPTSSPTI MPSNLSDWGS 600 PDGKLEWGIQ GEELNKLRKS ASFGIRSNGS SLAAGAVSMP AALDEPDVSW VQSLVKDNPP 660 LNSGHLGFEE QQQQCHLNTG GSEMLPAWVE QLYIEQEQMV A

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MCSGSERKPT YTGFIMENKF QKQDGYCCNL SVLLELSASN DLIGFKREIE GGRDVDEPGL  60
WYGRRIGSKN MGFEERTPLM IAALLGSKDV LNYILEMGRV DVNRCCGSDG ATALHCAVAG  120
GSASSLEVVK LLLAASADHN AVDANGNHAI DLLVPVVNSG FNLRRKALEL VLKGGYTRDE  180
SCVLADLNPD EIDGQEQQEV STPILSKDGT EKKEYPVDLT LPDIKNGIFG TDEFRMYTFK  240
VKPCSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP EFRKGSCRQG DACEYAHGIF  300
ECWLHPAQYR TRLCKDETNC TRRVCFFAHK PEELRPLYAS TGSAVPSPRS FSANGSALDM  360
GSVSPLALGS PPVLIPPTSM TPSGSSSPMV GWPNQTSVVP PILQLPSSRL KSALSARDMD  420
VDMELLGLDS HHRRQQQLVN EIGFSSPSGW NNDLSTASAF AVSGDRTLEL NRLGGVKPTN  480
LEDIFGSHDP TILPQLQGLT VDSTVSQLQS QTGIQMCQNI NQKLRSSYPT NFSSSPVRTS  540
SFGFDPSGVA AAAVLNSRSA AFAKRSQSFI ERNAVNRHTG FSSPTSSPTI MPSNLSDWGS  600
PDGKLEWGIQ GEELNKLRKS ASFGIRSNGS SLAAGAVSMP AALDEPDVSW VQSLVKDNPP  660
LNSGHLGFEE QQQQCHLNTG GSEMLPAWVE QLYIEQEQMV A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein