PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021664485.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C2H2

Protein Properties

Length: 459aa MW: 49516.3 Da PI: 7.4555

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021664485.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	64	85	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cgk+Fs+ H r H XP_021664485.1 64 VCEYCGKTFSSGKAWGGHKRHH 85 6*********977766666655 PP
2	zf-C2H2	11.3	0.0011	133	153	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk+F + +L H+r H XP_021664485.1 133 CCLCGKTFLSTNSLFGHMRYH 153 9******************99 PP
3	zf-C2H2	14.5	0.0001	303	324	1	22
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 +kC+ C+ksF++ + L++H ++ XP_021664485.1 303 FKCSTCDKSFPTFHALRSHRSS 324 89*****************875 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MDDHQLQYQP PLEDSAAKTS KLCIKIKIPN NTTYTTKKPG GEGGGVEDVS GSGDLQGQPA 60 GYRVCEYCGK TFSSGKAWGG HKRHHLKLMK NKNGKETQEA SNIEMKKQKH GGSNRCNTIK 120 AGDVTISGGK PICCLCGKTF LSTNSLFGHM RYHPDRDWKG IRPPPPPPLS PKNQIISSAL 180 EKVSDSSIDL LDSLSGGWQK KGKRGTCASD LIPEAAYSLL TLSRYFGLST PPAYVGGHGL 240 ETSGSSTKSL GKAIMAETGS GSDHRSKEDE DSDEICGLVT KKKRRKMNYI SKLRNSETEP 300 CEFKCSTCDK SFPTFHALRS HRSSFNCKKR SNELASGSAM VDDDASAAEE IPASEPDDET 360 EETREDDPCP VASIETSFHC DICEKTFPTG QALGGHKRCH RRAPAKPLSN EAVSAEASYV 420 ASNTASSGEA EGIQAGHGVI GFDLNKPYVM QDGEENLLS

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MDDHQLQYQP PLEDSAAKTS KLCIKIKIPN NTTYTTKKPG GEGGGVEDVS GSGDLQGQPA  60
GYRVCEYCGK TFSSGKAWGG HKRHHLKLMK NKNGKETQEA SNIEMKKQKH GGSNRCNTIK  120
AGDVTISGGK PICCLCGKTF LSTNSLFGHM RYHPDRDWKG IRPPPPPPLS PKNQIISSAL  180
EKVSDSSIDL LDSLSGGWQK KGKRGTCASD LIPEAAYSLL TLSRYFGLST PPAYVGGHGL  240
ETSGSSTKSL GKAIMAETGS GSDHRSKEDE DSDEICGLVT KKKRRKMNYI SKLRNSETEP  300
CEFKCSTCDK SFPTFHALRS HRSSFNCKKR SNELASGSAM VDDDASAAEE IPASEPDDET  360
EETREDDPCP VASIETSFHC DICEKTFPTG QALGGHKRCH RRAPAKPLSN EAVSAEASYV  420
ASNTASSGEA EGIQAGHGVI GFDLNKPYVM QDGEENLLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	281	285	KKKRR
2	281	286	KKKRRK
3	282	286	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	2e-17	C2H2 family protein