PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_021661826.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 565aa MW: 62940.9 Da PI: 9.3816 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.3 | 1.6e-24 | 13 | 114 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ + ++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + + XP_021661826.1 13 FCKTLTASDTSTHGGFSVPRRAAEDCfppldytQ--QRPSQELVAKDLHGFEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGE 103 99****************************9743..345679************************************************..449 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+++++r+ XP_021661826.1 104 DGELRLGIRRA 114 999*****996 PP | |||||||
2 | Auxin_resp | 122.4 | 3.3e-40 | 139 | 220 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a++++svF+++YnPras+seF+++ +k++k+l++++s+GmRfkm+feted++err++G+++g+sdldp rWp+SkWr+L XP_021661826.1 139 VVNAMTMRSVFNIYYNPRASSSEFIIPSRKFLKSLDHSFSIGMRFKMRFETEDAAERRCMGIITGISDLDPARWPGSKWRCL 220 68999****************************************************************************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 565 aa Download sequence |
MEAAVKSTTP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP PLDYTQQRPS QELVAKDLHG 60 FEWRFRHIYR GQPRRHLLTT GWSAFVNKKK LVSGDAVLFL RGEDGELRLG IRRAAQVKCG 120 ATLPALCTQQ LNHSTLTDVV NAMTMRSVFN IYYNPRASSS EFIIPSRKFL KSLDHSFSIG 180 MRFKMRFETE DAAERRCMGI ITGISDLDPA RWPGSKWRCL VVRWDDMETS RHSRVSPWEI 240 EPSGPVSSSS NFMAPGLKRS RSGLPSSKPE FPVPDGIGVS DFGESSRFQK VLQGQEISSF 300 NPLYDGGDQN RHPSETRRCF PSTIGSGIAT TRNGARDPIV NSDISRKGIG FSESFRFHKV 360 LQGQEIIPSS TFGRYPTATN EGYNTRMCLP KQVSSPPSVL MFQKASNPIS NPSSVNNFND 420 QEEQGVSIRS WFHNPETYGE KHTSSLHILR RDDQWGMGSF SKSCGPIQHG ISPLVAQSTF 480 RRGQDIVSSC KSSCRLFGFQ LTEDRHVANK DDNSSIPVTS LNLGSPFLPH GGDQFHLKPP 540 AITNAVGSNC TKGILQKNPE NYDIY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-156 | ARF family protein |