PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021657772.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | LSD | ||||||||
Protein Properties | Length: 134aa MW: 14660.8 Da PI: 6.7155 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41.2 | 2.7e-13 | 45 | 69 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYPrGA++V+C++C+ V XP_021657772.1 45 CGSCRSLLSYPRGARNVQCSCCQMV 69 ***********************98 PP | |||||||
2 | zf-LSD1 | 43.4 | 5.5e-14 | 83 | 107 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg C +lL+YP+GA+sVRC++C++V XP_021657772.1 83 CGRCAVLLMYPYGASSVRCSSCHFV 107 ***********************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence |
MEEEKKEVEE GPPPGWQSIP PPGSSQPPPA PLQQPPSSEM AQMVCGSCRS LLSYPRGARN 60 VQCSCCQMVN FVLEAHEVGQ VNCGRCAVLL MYPYGASSVR CSSCHFVTEI GVHNRRPPWS 120 VIQGYPPLPP NPVW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 3e-39 | LSD family protein |