PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021657588.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 305aa MW: 34355.8 Da PI: 6.5911

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021657588.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	47.8	2.4e-15	225	250	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tGtC+yGd C+FaHg XP_021657588.1 225 FKTELCNKWQETGTCPYGDHCQFAHG 250 79***********************8 PP
2	zf-CCCH	21	5.8e-07	263	288	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr +++ +C+yG rC+F H+ XP_021657588.1 263 YKTEVCRMVLAGDICPYGHRCHFRHV 288 9********55********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence
MQNEAASTTA NDDDLNIATK SAESLPNEVD FTSMLCPKAS HSLTPYVDSR FVMQQQDLVN 60 RSALCLTRLR EAAREVDSLR LENAALRSVN QELNNHLSLL LQASVQKRCP SSDQNTTSFE 120 IMNGFRNLCN ISDFGGEELC EDENPKSVME VQTAVAKERT SLPKIISVRS NGYLKTSQTG 180 VSKTRSVTRP KTASPINGAL KVYVRGGKEE EEEPLELDVY NQGMFKTELC NKWQETGTCP 240 YGDHCQFAHG IEELRPVIRH PRYKTEVCRM VLAGDICPYG HRCHFRHVLT EQESFMGHLK 300 PKLER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	2e-88	C3H family protein