PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021653118.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

ARF

Protein Properties

Length: 1137aa MW: 126966 Da PI: 6.5117

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021653118.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.4	4.7e-22	126	226	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ +l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F + +++ XP_021653118.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-LELVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIR--DEK 217 99***************************9545444.48**********************************************4..466 PP E..EEEEE- CS B3 90 felvvkvfr 98 +l+++++ XP_021653118.1 218 SQLLLGIRH 226 667888875 PP
2	Auxin_resp	125	5.1e-41	252	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k++ka++++vs+GmRf+m+feteds rr++Gt++g+sdldp+rW++S+Wr+L+ XP_021653118.1 252 AAHAAANNSPFTVFYNPRASPSEFVIPFAKYNKAMYTQVSLGMRFRMMFETEDSGVRRYMGTITGISDLDPLRWKKSQWRNLQ 334 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1137 aa Download sequence
MKVPPNGFMA NSAEGERKNI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE 60 TDFIPNYPNL PSKLICMLHN VTLHADVETD EVYAQMTLQP VNKYDKEALL ASEMGLKQSR 120 QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPALELVAKD LHDNTWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRHANKQ QPALSSSVIS 240 SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPFA KYNKAMYTQV SLGMRFRMMF 300 ETEDSGVRRY MGTITGISDL DPLRWKKSQW RNLQVGWDES TAGERPSRVG IWEIEPVVTP 360 FYICPPPFFR PKFPKQPGML DDESDIENAF KRAMPWLGDD FGMKDTPSSI FPGLSLVQWM 420 SMQQNNQFPA TQAGYFPSML PSNALHNNVS TDDPSKLLNF QAPGLSVPSI QFNKANPQNQ 480 VGQLPQPSTT WTQQQQLQQL LQANISQQQP AQPQQLQQQP HPQQQQQRQQ PQPPQQQQLS 540 QQQQQPQPQP QPQPQPRQIR QQPPQLQQQQ QQHIFQPLVN NGSVTPSQIS NQNLQQQMVY 600 SQVQQQQQLL ASNTQSQNIP PANKSSYQLT SLPQDTPFQQ QMEQQSSLLQ RHQQQTQLQQ 660 SPLQLLQQNL SQRTQPQPPP QPQGQQLSQP SLSEQQLQLQ LLQKLQQQQQ QQQLLSPTSS 720 PLQPQLLQQQ QNHQQNQHFQ QSPLSQSQPL FATTSPLSQS QPLSSNSFST AALMQSQSFP 780 VYHSRVLQKS PTTIRAHSTL TDGDAPSCST SPSTENCQIS PSNFLNRNQE SPAVLLGDPV 840 IEPATNLVQE LNSKSDIQVK HEFPSSKGLD QLKYKGAMTD QLEISSSGTS YCLDAGNSQQ 900 NFSLPTFGLD GDVQSHPRNS LPFATNIDSL APDTLLSRGY DSQKDLQNLL TNYGGTPRDV 960 ETELSTAAIS SQSFGVPNIP FKPGCSNDVA INDSGVLNGG LWANQTQRMR TYTKVQKRGS 1020 VGRSIDVTRY KGYGELRHDL ARMFGIEGQL EDPQSSDWKL VYVDHENDIL LVGDDPWEEF 1080 VSCVQSIKIL SSAEVQQMSL DGDLGSLPVP NQACSGTDSG NAWRGHYDDN SAASFNR

Sequence ? help Back to Top

Protein Sequence Length: 1137 aa Download sequence

MKVPPNGFMA NSAEGERKNI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TDFIPNYPNL PSKLICMLHN VTLHADVETD EVYAQMTLQP VNKYDKEALL ASEMGLKQSR  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPALELVAKD LHDNTWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRHANKQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPFA KYNKAMYTQV SLGMRFRMMF  300
ETEDSGVRRY MGTITGISDL DPLRWKKSQW RNLQVGWDES TAGERPSRVG IWEIEPVVTP  360
FYICPPPFFR PKFPKQPGML DDESDIENAF KRAMPWLGDD FGMKDTPSSI FPGLSLVQWM  420
SMQQNNQFPA TQAGYFPSML PSNALHNNVS TDDPSKLLNF QAPGLSVPSI QFNKANPQNQ  480
VGQLPQPSTT WTQQQQLQQL LQANISQQQP AQPQQLQQQP HPQQQQQRQQ PQPPQQQQLS  540
QQQQQPQPQP QPQPQPRQIR QQPPQLQQQQ QQHIFQPLVN NGSVTPSQIS NQNLQQQMVY  600
SQVQQQQQLL ASNTQSQNIP PANKSSYQLT SLPQDTPFQQ QMEQQSSLLQ RHQQQTQLQQ  660
SPLQLLQQNL SQRTQPQPPP QPQGQQLSQP SLSEQQLQLQ LLQKLQQQQQ QQQLLSPTSS  720
PLQPQLLQQQ QNHQQNQHFQ QSPLSQSQPL FATTSPLSQS QPLSSNSFST AALMQSQSFP  780
VYHSRVLQKS PTTIRAHSTL TDGDAPSCST SPSTENCQIS PSNFLNRNQE SPAVLLGDPV  840
IEPATNLVQE LNSKSDIQVK HEFPSSKGLD QLKYKGAMTD QLEISSSGTS YCLDAGNSQQ  900
NFSLPTFGLD GDVQSHPRNS LPFATNIDSL APDTLLSRGY DSQKDLQNLL TNYGGTPRDV  960
ETELSTAAIS SQSFGVPNIP FKPGCSNDVA INDSGVLNGG LWANQTQRMR TYTKVQKRGS  1020
VGRSIDVTRY KGYGELRHDL ARMFGIEGQL EDPQSSDWKL VYVDHENDIL LVGDDPWEEF  1080
VSCVQSIKIL SSAEVQQMSL DGDLGSLPVP NQACSGTDSG NAWRGHYDDN SAASFNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein