PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021650829.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | C3H | ||||||||
Protein Properties | Length: 344aa MW: 38706.6 Da PI: 8.5473 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.5 | 1.1e-08 | 86 | 111 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+ C f+ G C+ G++C+FaHg+ XP_021650829.1 86 FKTRMCAKFRT-GNCRNGENCNFAHGM 111 699******99.*************95 PP | |||||||
2 | zf-CCCH | 27.4 | 5.8e-09 | 149 | 172 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++lC+ f+ + +C+yG++C+F H XP_021650829.1 149 KMKLCKKFYNGEECPYGESCNFLH 172 789*******66************ PP | |||||||
3 | zf-CCCH | 42.1 | 1.5e-13 | 233 | 259 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC + tG+C++G++C+FaHg+ XP_021650829.1 233 WKTKLCTKWETTGQCPFGEKCHFAHGQ 259 8************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence |
MSYPDSRPPY MSTQLPYQPG NDAIGVWPQF PTNSNEQFDL HSQFEQHQSP YKRTRISEDS 60 SSQSVNFRMP LPNNPPINKG TTSIFFKTRM CAKFRTGNCR NGENCNFAHG MQDLRQPPPN 120 WQELVGVGVR GEEDRSAGNW DDDQRIIHKM KLCKKFYNGE ECPYGESCNF LHEDPSKFRD 180 DARRSRESSA ISIGTTGQPV IHGIGRLNTT EVNKPINNAG SDAIRANMKP VYWKTKLCTK 240 WETTGQCPFG EKCHFAHGQA ELQVPGGRVE GEAGNAGSIL TKPPPIIGNH VSPIMTASVP 300 NFIEEGQSKK CLLKWKRAKK INLIYGDWLD DLPIVHNLTN QVKS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 5e-88 | C3H family protein |