PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021639416.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

NF-YC

Protein Properties

Length: 295aa MW: 32623.1 Da PI: 4.9796

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021639416.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	55.4	1.4e-17	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l ++ + + +t+ ++ +v++ ++fdfl +iv r XP_021639416.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDHTYKITLQRGAKTMSALHLKHCVQSYNVFDFLREIVSR 86 5789*************************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDHT YKITLQRGAK 60 TMSALHLKHC VQSYNVFDFL REIVSRVPDY GHGHSDNTAD HRTLQKRKPI GDECNDSDEE 120 LKRSRMHEMN HAGSSGRGRG RGRGRGRGRG VRNMERESSH REIESEPGTT LQQNVKNNSN 180 PGMVVDNGSE QKELLEEDMI VGDGATASER NFDLNADVNE NEDTKATAAA TTAAAPAAAA 240 TVVDNSSAVP TAETNQEEYP GWSLSEMDKM AIDPLQLAKL GTRLDEEEED YDEEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	146	RGRGRGRGRG
2	137	147	RGRGRGRGRGR
3	139	148	RGRGRGRGRG
4	139	149	RGRGRGRGRGR
5	141	150	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	9e-72	NF-YC family protein