PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021635061.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 859aa MW: 95575.8 Da PI: 4.8789

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021635061.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.6	4.3e-08	288	307	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ff++ G+C +G++C+F H XP_021635061.1 288 ICDFFSK-GWCIRGSSCTFLH 307 8****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 859 aa Download sequence
MPPPISAAQG SDDDQSPSSS GPPVEISDSD LEKDDQETEI EVEEEEIEND NEEEEYEEII 60 VVEEEEIEEE VEVEEDDMSD SSKEANAKSN DVSQDTEFEG TDRQLGLRST PGRSSLGLPS 120 NSLVEDGVCN SQFSGPLNEP VKLQEELHVN YEDSKKSGTN GENGSQRSLV KNDTEALMIK 180 KKSKEISKHY SDSMAHFFND EAMAAETTSP SSITVNEVTN ALAIKDSLGM ETNGILDSEV 240 DVNPMEKRSE DKEQTTSRFS RLVTLEKRTR SLSPSAEFED QNKRPAVICD FFSKGWCIRG 300 SSCTFLHIKN KTVNAKEQLE GDAAAANFSK RDQFDEGLKN ITEKQKFPGF PDLMAPSIGN 360 SAAFSCQFSS ERILALENGE SQRLHQLDDK HKSLSLQRED LSQGFHSDTQ QFPSSKDDHG 420 VSSSLKNVGI DNLRRSWPAS DYGSYASPIN RGSSPSFQSR LLPELRYSSS FSSVTSSNNH 480 RENSFSYLSS LDNLTYIRDQ FVQGTSLDGS LSSSVMLPSQ QISAWKGPLF SFSSSLNTSP 540 FGSQKLSDND RNYHASRSLR QSASLLFGSE RETSLLTSVS RGPLHYAEHK AKISSNDWEP 600 SIPFRPSFSI TYTVASSPGS QYDPLRDSID LSTTGYRLPF KFSFVSQERS NLNSSHQPIY 660 DNSLSKTLGS ECHNDKSTVS LHGRFHENVL DKNCYTPGKV MGGTCVVSGQ KGTMPKEENA 720 SSSGHLSDVP NTSKIDVDCD SRHEYDAPRH KQDFKVDRVR QKNEMDVDQK TDGESRVLRH 780 FRAALIDFVK ELLRPTWREG HLSKDAHNTI AKKAVEKVLR TLQPHQIPTT VESTRQYLSS 840 SQPKIAKLVE GYCTKYGKS

Sequence ? help Back to Top

Protein Sequence Length: 859 aa Download sequence

MPPPISAAQG SDDDQSPSSS GPPVEISDSD LEKDDQETEI EVEEEEIEND NEEEEYEEII  60
VVEEEEIEEE VEVEEDDMSD SSKEANAKSN DVSQDTEFEG TDRQLGLRST PGRSSLGLPS  120
NSLVEDGVCN SQFSGPLNEP VKLQEELHVN YEDSKKSGTN GENGSQRSLV KNDTEALMIK  180
KKSKEISKHY SDSMAHFFND EAMAAETTSP SSITVNEVTN ALAIKDSLGM ETNGILDSEV  240
DVNPMEKRSE DKEQTTSRFS RLVTLEKRTR SLSPSAEFED QNKRPAVICD FFSKGWCIRG  300
SSCTFLHIKN KTVNAKEQLE GDAAAANFSK RDQFDEGLKN ITEKQKFPGF PDLMAPSIGN  360
SAAFSCQFSS ERILALENGE SQRLHQLDDK HKSLSLQRED LSQGFHSDTQ QFPSSKDDHG  420
VSSSLKNVGI DNLRRSWPAS DYGSYASPIN RGSSPSFQSR LLPELRYSSS FSSVTSSNNH  480
RENSFSYLSS LDNLTYIRDQ FVQGTSLDGS LSSSVMLPSQ QISAWKGPLF SFSSSLNTSP  540
FGSQKLSDND RNYHASRSLR QSASLLFGSE RETSLLTSVS RGPLHYAEHK AKISSNDWEP  600
SIPFRPSFSI TYTVASSPGS QYDPLRDSID LSTTGYRLPF KFSFVSQERS NLNSSHQPIY  660
DNSLSKTLGS ECHNDKSTVS LHGRFHENVL DKNCYTPGKV MGGTCVVSGQ KGTMPKEENA  720
SSSGHLSDVP NTSKIDVDCD SRHEYDAPRH KQDFKVDRVR QKNEMDVDQK TDGESRVLRH  780
FRAALIDFVK ELLRPTWREG HLSKDAHNTI AKKAVEKVLR TLQPHQIPTT VESTRQYLSS  840
SQPKIAKLVE GYCTKYGKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	4e-40	C3H family protein