PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW34370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 140aa MW: 16100.8 Da PI: 10.288 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.2 | 8.9e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng++KKA+EL +LCdaev +++fsstg+ly+y+s RWW34370.1 10 RIDNSTSRQVTFSKRRNGLMKKAKELAILCDAEVGLVVFSSTGRLYDYAS 59 9***********************************************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence |
MVRGKIVIQR IDNSTSRQVT FSKRRNGLMK KAKELAILCD AEVGLVVFSS TGRLYDYAST 60 RFATPSCFDL LHYSLDSVLS MKSVIDRYKK ANEEHQLVLN ATSEVKVYIL RVHFKRLFIH 120 SMLFYLHNTL TSNFASLMQS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 6e-42 | MIKC_MADS family protein |