PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW32614.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C3H

Protein Properties

Length: 369aa MW: 40214.1 Da PI: 7.8388

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW32614.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.1	1.3e-07	124	146	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C +f++tG Ck+Gd C aHg RWW32614.1 124 TPCADFRKTGGCKRGDACELAHG 146 69****************99998 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MMIGRGIGYH NPTVHVPPWS PSDDPTAGNA TSSHLPVSGV ATGEGLLDEA TLAALQLYLG 60 CEEEAAEEAP PVVDAYASDN FRMYEFKVRR CARGRAHDWT ECPFAHPGEK ARRRDPRKHR 120 YSGTPCADFR KTGGCKRGDA CELAHGVFEC WLHPERYRTQ PCKDSTACRR RVCFFAHTPD 180 QLRVLPSHHQ QAATSASATA VESYDGSPLR QQSSMQSYLS KNLVCSPTAT LISPPKSPTS 240 ESPPISPNGA NLRRESWQPS SSVNEIVASL RRLQLCRAQS VPSSWELHIG NGGFGTPRGA 300 LAGFNAGFCS LPSTPTAASA VWSDEEAPVE RVESGRALRA KMFERLSKEN ILGRAEATPD 360 VGWVSELLK

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MMIGRGIGYH NPTVHVPPWS PSDDPTAGNA TSSHLPVSGV ATGEGLLDEA TLAALQLYLG  60
CEEEAAEEAP PVVDAYASDN FRMYEFKVRR CARGRAHDWT ECPFAHPGEK ARRRDPRKHR  120
YSGTPCADFR KTGGCKRGDA CELAHGVFEC WLHPERYRTQ PCKDSTACRR RVCFFAHTPD  180
QLRVLPSHHQ QAATSASATA VESYDGSPLR QQSSMQSYLS KNLVCSPTAT LISPPKSPTS  240
ESPPISPNGA NLRRESWQPS SSVNEIVASL RRLQLCRAQS VPSSWELHIG NGGFGTPRGA  300
LAGFNAGFCS LPSTPTAASA VWSDEEAPVE RVESGRALRA KMFERLSKEN ILGRAEATPD  360
VGWVSELLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-102	C3H family protein