PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW29133.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 182aa MW: 20381.9 Da PI: 6.3685 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 31.1 | 3.1e-10 | 2 | 43 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i+ ks+rq+tfskRr+g+ KA+ L+ + + a+i +ss g+ RWW29133.1 2 IDKKSRRQITFSKRRKGLYRKASYLCS-QGYDMAIIAMSSVGN 43 899*******************87764.367888888887776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence |
MIDKKSRRQI TFSKRRKGLY RKASYLCSQG YDMAIIAMSS VGNAFAFGNP DIDAVIRRYE 60 RDGHPIDSDK EEEEEEQGGE VAAVVPPATT LGVLHGSGPT LDLVTTPKAG EEGASSSRMI 120 GEETATKASM LEDHRFWWNK SFDHLRVEEL RDLEKAMVEL RNKAQERADH ILRSTTLSLG 180 RL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 5e-15 | M-type_MADS family protein |