PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW27025.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | C3H | ||||||||
Protein Properties | Length: 411aa MW: 44949.6 Da PI: 8.229 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.3 | 1.5e-09 | 21 | 47 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C ++ rtG C++G +CkF+H++ RWW27025.1 21 PGEPDCAYYIRTGLCRFGMTCKFNHPQ 47 5789*********************97 PP | |||||||
2 | zf-CCCH | 39.2 | 1.2e-12 | 68 | 92 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ RWW27025.1 68 QPECQYYLKTGTCKFGSTCKFHHPK 92 799********************96 PP | |||||||
3 | zf-CCCH | 32.4 | 1.6e-10 | 114 | 138 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C f+ rtG+Ck+G++Ck++H++ RWW27025.1 114 EQECAFYIRTGECKFGSTCKYHHPQ 138 568********************97 PP | |||||||
4 | zf-CCCH | 38 | 2.8e-12 | 271 | 297 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ RWW27025.1 271 PGQPECQFYMKTGDCKFGAVCRFHHPR 297 5789*********************96 PP | |||||||
5 | zf-CCCH | 38.1 | 2.5e-12 | 317 | 343 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ RWW27025.1 317 PGEPLCVFYSRYGICKFGPNCKFDHPM 343 589**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence |
MWKTNMRGSD PVESGPYPDR PGEPDCAYYI RTGLCRFGMT CKFNHPQDRM LAIAAARIRG 60 GYPERVGQPE CQYYLKTGTC KFGSTCKFHH PKEKAGIARQ AQLNILGYPL RPNEQECAFY 120 IRTGECKFGS TCKYHHPQPS NATLALRGSP IYPSAHSPTT PGQQSYSAGM TNWTLPRSSF 180 ISSPRWQASS SYAQLILPQG VVQVPGWTSY SGQLGSSPGS QRTAGGGQFY SPSQQGETNI 240 GAQGKFSSYR PGSVSMGLYA VPRENIFPER PGQPECQFYM KTGDCKFGAV CRFHHPRERL 300 IPTPNCVLSP LGLPLRPGEP LCVFYSRYGI CKFGPNCKFD HPMGTFTYGL SESSMADVPT 360 VEHLLGSTLE PPTLTLPSEE TANGSSGVSI RAPASESREA TSVDENDEAD S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-150 | C3H family protein |