PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW26928.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C3H

Protein Properties

Length: 590aa MW: 61959.6 Da PI: 7.2031

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW26928.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.2	6.1e-08	235	255	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg RWW26928.1 235 PCPEFRK-GSCRNGDACEYAHG 255 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence
MCTSLVKSCP PANPGAVGGG DVKRPAASEA AALLLELAAS DDLAAFKRAV EEDGYSVDAA 60 ALWYGRSSDR GMGYQQRTPL MIAALYGSTA VIGYILAGHP AEAARRAASD GATALHCAAA 120 GGSAASLEAV KLLIGASADV VDALDASGNR PGDVIARQSS TTAAKSLEKK EYPPDLTLPD 180 IKTGIYGTDE FRMYTFKVKP CSRAYSHDWT ECPFVHPGEN ARRRDPRKYS YSCVPCPEFR 240 KGSCRNGDAC EYAHGVFESW LHPAQYRTRL CKDETGCNRR VCFFAHKPEE LRTVNPSVAS 300 VNGMVSSSPR SSSPGLSSLD MATALMLMQQ PGSPMSPSAA SSGLGATAAW VNQTGGVMTP 360 PPALQLPSSR LKASLSARDL DFDLDLLGLE GYQQKLIDEI TKAASPRANW GTNSLAEGLA 420 ASRISEYSDL LGSKHQSQLL SGYGGNLSSS PPVAATSSFG LDHAMAKAIM NSRASAFAKR 480 SQSFCDRGAT AGRQSTLSAM TTAAVAAPSL LSDWGSPDGK LDWGVQGEEL NKLRKSSSFA 540 FRGAGPATAS TGMNEPDLSW VHSLVKDGPA APSSSGGDLF SPWSEEKIMA

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence

MCTSLVKSCP PANPGAVGGG DVKRPAASEA AALLLELAAS DDLAAFKRAV EEDGYSVDAA  60
ALWYGRSSDR GMGYQQRTPL MIAALYGSTA VIGYILAGHP AEAARRAASD GATALHCAAA  120
GGSAASLEAV KLLIGASADV VDALDASGNR PGDVIARQSS TTAAKSLEKK EYPPDLTLPD  180
IKTGIYGTDE FRMYTFKVKP CSRAYSHDWT ECPFVHPGEN ARRRDPRKYS YSCVPCPEFR  240
KGSCRNGDAC EYAHGVFESW LHPAQYRTRL CKDETGCNRR VCFFAHKPEE LRTVNPSVAS  300
VNGMVSSSPR SSSPGLSSLD MATALMLMQQ PGSPMSPSAA SSGLGATAAW VNQTGGVMTP  360
PPALQLPSSR LKASLSARDL DFDLDLLGLE GYQQKLIDEI TKAASPRANW GTNSLAEGLA  420
ASRISEYSDL LGSKHQSQLL SGYGGNLSSS PPVAATSSFG LDHAMAKAIM NSRASAFAKR  480
SQSFCDRGAT AGRQSTLSAM TTAAVAAPSL LSDWGSPDGK LDWGVQGEEL NKLRKSSSFA  540
FRGAGPATAS TGMNEPDLSW VHSLVKDGPA APSSSGGDLF SPWSEEKIMA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-133	C3H family protein