PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW26098.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C3H

Protein Properties

Length: 391aa MW: 42454.9 Da PI: 7.658

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW26098.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.4	2e-12	315	339	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ + ++G+C+y d C+FaHg RWW26098.1 315 KTELCNKWEESGECPYSDHCQFAHG 339 9***********************8 PP
2	zf-CCCH	23.2	1.2e-07	352	377	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yktelCr +GtC+yG rC+F H+ RWW26098.1 352 YKTELCRMVVSGGTCPYGHRCHFRHS 377 9**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MQQEVGCPSN GDRLGYSITS PSFVSPDRRS RSPVYLKGGG DLPYTYPVFS AEDSLALLTP 60 PLPASGCVSI SPSSVPFDEV EAAAASATEN RLYLARLALH YQEMTEDYDL CLSHLRDAAE 120 EVESLRRENA SLRAANVELT RRLGLLARKH GGRVTPAAAA ALADEFRGLS VAEPPPAEES 180 PTSVLAFQES VSGCQFTRTP VVEKRVSLPK SISIRSSGYL KLNPGGGATS AANPNGRFRL 240 SNPVMIGSVC IRFPHASSCN LIFCLLPKKQ QRVSVGGGST NKKGERSRGE DKEEEGEEGG 300 GGAMGVEVYH QGMLKTELCN KWEESGECPY SDHCQFAHGI AELRPVLRHP RYKTELCRMV 360 VSGGTCPYGH RCHFRHSISP SDHQRILLRP Q

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MQQEVGCPSN GDRLGYSITS PSFVSPDRRS RSPVYLKGGG DLPYTYPVFS AEDSLALLTP  60
PLPASGCVSI SPSSVPFDEV EAAAASATEN RLYLARLALH YQEMTEDYDL CLSHLRDAAE  120
EVESLRRENA SLRAANVELT RRLGLLARKH GGRVTPAAAA ALADEFRGLS VAEPPPAEES  180
PTSVLAFQES VSGCQFTRTP VVEKRVSLPK SISIRSSGYL KLNPGGGATS AANPNGRFRL  240
SNPVMIGSVC IRFPHASSCN LIFCLLPKKQ QRVSVGGGST NKKGERSRGE DKEEEGEEGG  300
GGAMGVEVYH QGMLKTELCN KWEESGECPY SDHCQFAHGI AELRPVLRHP RYKTELCRMV  360
VSGGTCPYGH RCHFRHSISP SDHQRILLRP Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	2e-52	C3H family protein