PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW23738.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | LBD | ||||||||
Protein Properties | Length: 201aa MW: 21752.7 Da PI: 7.7728 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.5 | 1.1e-38 | 8 | 109 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkCa+dCv+apyf +eq + +fa++hk+FGasn +kll ++p+ +r +a+ +++yeA+ar+rdPvyG+vg+i++lqqq+++l+ +l l+k RWW23738.1 8 PCGACKFLRRKCASDCVFAPYFSSEQgAVRFAAIHKVFGASNASKLLLHVPQADRCEAAVAIAYEAQARLRDPVYGCVGHIFALQQQVATLQLQLMLIK 106 7***********************9989*******************************************************************9998 PP DUF260 99 eel 101 +++ RWW23738.1 107 AQI 109 875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence |
MASGTGSPCG ACKFLRRKCA SDCVFAPYFS SEQGAVRFAA IHKVFGASNA SKLLLHVPQA 60 DRCEAAVAIA YEAQARLRDP VYGCVGHIFA LQQQVATLQL QLMLIKAQIA QRLVTSQPSG 120 SQWQGNDDGN PFLQPCSSWE SMSSSQSSLN FINQDSNRLL PKHDAVLKED LFVGGSSSKM 180 WVTHAEPGEL QDLAFRMAGS L |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 4e-47 | LBD family protein |