PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW23090.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C3H

Protein Properties

Length: 357aa MW: 38554.4 Da PI: 6.9131

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW23090.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.7	4e-08	106	130	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaHg RWW23090.1 106 FKTKLCCKFRA-GTCPYITNCNFAHG 130 69*******.***********8 PP
2	zf-CCCH	23.3	1.1e-07	176	201	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk ++C+ f+ C+yGd+C+F+H+ RWW23090.1 176 YKGRRCKKFYTEEGCPYGDTCTFIHD 201 899**********************7 PP
3	zf-CCCH	43.4	5.6e-14	237	262	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg RWW23090.1 237 WKTRICNKWEMTGYCPFGSKCHFAHG 262 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MDYGGGTAYP GSNAIAIIPD ASGPPGRDSW LPGGSDQLVW ATDEDYRAWS GDASADAAFN 60 SAYDGRESQS RAGSEQPPGK RSRNSQGDSQ GNNRSTSSKA IGKMFFKTKL CCKFRAGTCP 120 YITNCNFAHG IEELRKPPPN WQEIVAAHEE DSEAREERQI PTMSSSIVIG DSERSYKGRR 180 CKKFYTEEGC PYGDTCTFIH DEQSKARESV AISLSPTVGG SGYGGGANGS SQKPSNWKTR 240 ICNKWEMTGY CPFGSKCHFA HGAAELHRYG GGLMETDGRD VSSATPDSKQ AGTLTKAPSD 300 ASVASSISVP HADMYHIGVP SQRSAGSIQR QGQRSIEKWK GPDKISKIYG DWIDDIE

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MDYGGGTAYP GSNAIAIIPD ASGPPGRDSW LPGGSDQLVW ATDEDYRAWS GDASADAAFN  60
SAYDGRESQS RAGSEQPPGK RSRNSQGDSQ GNNRSTSSKA IGKMFFKTKL CCKFRAGTCP  120
YITNCNFAHG IEELRKPPPN WQEIVAAHEE DSEAREERQI PTMSSSIVIG DSERSYKGRR  180
CKKFYTEEGC PYGDTCTFIH DEQSKARESV AISLSPTVGG SGYGGGANGS SQKPSNWKTR  240
ICNKWEMTGY CPFGSKCHFA HGAAELHRYG GGLMETDGRD VSSATPDSKQ AGTLTKAPSD  300
ASVASSISVP HADMYHIGVP SQRSAGSIQR QGQRSIEKWK GPDKISKIYG DWIDDIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-123	C3H family protein