PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW22140.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C3H

Protein Properties

Length: 638aa MW: 67355 Da PI: 7.9356

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW22140.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24	6.6e-08	237	257	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg RWW22140.1 237 PCPEFRK-GSCRNGDACEYAHG 257 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 638 aa Download sequence
MVETSSEADA VLLELAASDD LAAFRRAVED DGQPLDAAAS WYGRSPGRGM GYQQRTPLMI 60 AALYGSTAVM GYILSARPAE AVRCAASDGA TALHCAAAGG SAASLEAVKL LIGASADVVD 120 ALDASGSRPG DVIARQFSSS VAKSLEVILK ATSCPRVSSP CKEEQAKQGE KKEYPPDLTL 180 PDIKTGIYGT DEFRMYTFKI KPCSRAYSHD WTECPFVHPG ENARRRDPRK YSYSCVPCPE 240 FRKGSCRNGD ACEYAHGVFE SWLHPAQYRT RLCKDEIGCN RRVCFFAHKP EELRTVNPTA 300 ASVAGMVLPS SSQGLSSLDM AMALTLMQQP GSPMTPSASS GIGATAAWMN QTGGVATPPA 360 LQLPSSRLKA LLSARDLDFD LKLLGLEEYQ QKLVDEIAKT ASPRASWGTN SLAAATTTRA 420 PEYTDLLGSV DPSLLTQLQG LSARKKTGPQ MQSPAALQMH QSQLLSGYGG GGLSSSPPVS 480 AASSFGLDHS LAKAIMNSRA SAFAKRSQSF CDRGATAGRQ STLSAMSTAA SAATPPSLLS 540 DWGSPDGKLN WGIQGEELNK LRKSASFAFR SSQAAMGGVA PATGATNEPD VSWVQSLVKD 600 GPSAPVGRPG MGKHQNRYQL NGGGGDLFSP WAEEKIMA

Sequence ? help Back to Top

Protein Sequence Length: 638 aa Download sequence

MVETSSEADA VLLELAASDD LAAFRRAVED DGQPLDAAAS WYGRSPGRGM GYQQRTPLMI  60
AALYGSTAVM GYILSARPAE AVRCAASDGA TALHCAAAGG SAASLEAVKL LIGASADVVD  120
ALDASGSRPG DVIARQFSSS VAKSLEVILK ATSCPRVSSP CKEEQAKQGE KKEYPPDLTL  180
PDIKTGIYGT DEFRMYTFKI KPCSRAYSHD WTECPFVHPG ENARRRDPRK YSYSCVPCPE  240
FRKGSCRNGD ACEYAHGVFE SWLHPAQYRT RLCKDEIGCN RRVCFFAHKP EELRTVNPTA  300
ASVAGMVLPS SSQGLSSLDM AMALTLMQQP GSPMTPSASS GIGATAAWMN QTGGVATPPA  360
LQLPSSRLKA LLSARDLDFD LKLLGLEEYQ QKLVDEIAKT ASPRASWGTN SLAAATTTRA  420
PEYTDLLGSV DPSLLTQLQG LSARKKTGPQ MQSPAALQMH QSQLLSGYGG GGLSSSPPVS  480
AASSFGLDHS LAKAIMNSRA SAFAKRSQSF CDRGATAGRQ STLSAMSTAA SAATPPSLLS  540
DWGSPDGKLN WGIQGEELNK LRKSASFAFR SSQAAMGGVA PATGATNEPD VSWVQSLVKD  600
GPSAPVGRPG MGKHQNRYQL NGGGGDLFSP WAEEKIMA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-127	C3H family protein