PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW21880.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C3H

Protein Properties

Length: 697aa MW: 75294.3 Da PI: 6.3412

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW21880.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21	5.9e-07	285	305	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C +Gd C +aHg RWW21880.1 285 PCPDFRK-GACARGDMCEYAHG 305 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence
MNHLAVEPDD SFSSLLELAA NNDVDAFRRS LDRDPSAIDE FGLWYGREKG SNRIVLERRT 60 PLMVAATYGS LDVLGLLLSL TSSVDINRAA AHDGTTALHC AASGGSPSAA DAVKLVLSAG 120 ADPNSVDANG HRPADVVVVP PKLPDVRTVL EQLLGSSSSG TVEDHHHRAL RVTTRLSSSD 180 SPPLSSSPDA NGSPFCRSAS SPVMTAKAQE IQLPALPEKK EYPVDPSIPD IKNSIYATDE 240 FRMYSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKYH YSCVPCPDFR KGACARGDMC 300 EYAHGVFECW LHPAQYRTRL CKDGTNCSRR VCFFAHTREE LRPLYVSTGS AVPSPLSSME 360 TAAAMGLMPG SPSSVSAAMP PFTPAMSPSA NGHSSLAWAQ PNVPVLHLPG SNLQASRLRS 420 SLSARDMPLD DFSVMHECDA QQLIDDLCYT HLSSSLGNRM ARSKTLAPSN LDDLFSADFA 480 SSPKYKSDEG PFISPSHKAA SLGQFQQQQS LLSPINTVFS AKATEDHQLS GRSALLQVSL 540 GVSLAGRMSP RSMEPMNSHL SMHAHREKQL QTSRSLSHRD LGSGTSLVVS SVNASWSKWA 600 SSPSGTFDWG VNGDDLGLHK QSLSFELQDN GEEPDLSWVH SLVRESPPEK IGTVSVLLPG 660 PSRLQPANGV ENPQPDSLDE AAAVGAFEQM QLDQMAP

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence

MNHLAVEPDD SFSSLLELAA NNDVDAFRRS LDRDPSAIDE FGLWYGREKG SNRIVLERRT  60
PLMVAATYGS LDVLGLLLSL TSSVDINRAA AHDGTTALHC AASGGSPSAA DAVKLVLSAG  120
ADPNSVDANG HRPADVVVVP PKLPDVRTVL EQLLGSSSSG TVEDHHHRAL RVTTRLSSSD  180
SPPLSSSPDA NGSPFCRSAS SPVMTAKAQE IQLPALPEKK EYPVDPSIPD IKNSIYATDE  240
FRMYSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKYH YSCVPCPDFR KGACARGDMC  300
EYAHGVFECW LHPAQYRTRL CKDGTNCSRR VCFFAHTREE LRPLYVSTGS AVPSPLSSME  360
TAAAMGLMPG SPSSVSAAMP PFTPAMSPSA NGHSSLAWAQ PNVPVLHLPG SNLQASRLRS  420
SLSARDMPLD DFSVMHECDA QQLIDDLCYT HLSSSLGNRM ARSKTLAPSN LDDLFSADFA  480
SSPKYKSDEG PFISPSHKAA SLGQFQQQQS LLSPINTVFS AKATEDHQLS GRSALLQVSL  540
GVSLAGRMSP RSMEPMNSHL SMHAHREKQL QTSRSLSHRD LGSGTSLVVS SVNASWSKWA  600
SSPSGTFDWG VNGDDLGLHK QSLSFELQDN GEEPDLSWVH SLVRESPPEK IGTVSVLLPG  660
PSRLQPANGV ENPQPDSLDE AAAVGAFEQM QLDQMAP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein