PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW21214.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 243aa MW: 26792.8 Da PI: 4.8114 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.1 | 5.6e-14 | 17 | 48 | 12 | 43 |
HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsst 43 ++ kRr+gi KKA+ELS+LC+a+v+++ + ++ RWW21214.1 17 SLDKRRQGICKKASELSTLCNADVCLVCYPPD 48 688************************99765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence |
MAPSDEQRRS QKSILRSLDK RRQGICKKAS ELSTLCNADV CLVCYPPDAA APVVWPEDPT 60 RVGRTIRRYL AASSSKKLAK NQVSFKNPNP SQAQEAVTNN GDDDDDDEDD DDDDEEEEEY 120 KEAKARKGKE KVVDTEDRLR LPWPDDERAL GSLVEALDSR LKKVRARIEQ LVAEDVASTS 180 TAPAPPDKYS TATGGASTSG SACREPPVPA FATVCPCLYC PLHGCWGVEC LHCQGRRPRE 240 DRS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18650.1 | 3e-10 | M-type_MADS family protein |