PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RWW20524.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 251aa MW: 28304 Da PI: 10.8483 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.1 | 2e-27 | 108 | 157 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ rqv fskRr g++KKA+ELSvLCdaeva+++fs+ gklye+ss RWW20524.1 108 RIEDRVSRQVCFSKRRSGLFKKAYELSVLCDAEVALLVFSPAGKLYEFSS 157 8***********************************************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence |
MNPRASESLA SITVFFPWEE RYLLEQFRKS RPRLSAASGC YVGGAPRCLR ERAQRTHGPP 60 YHLFVIGLAL SCACGVQPRR SLLMCGRLAD RVSKRRKMAR RGRVELRRIE DRVSRQVCFS 120 KRRSGLFKKA YELSVLCDAE VALLVFSPAG KLYEFSSVSR YVTSSAYHHN LLLFILRLLI 180 SRSLHRHPPP TIIYFKIHLK TLCVARPSVI SSLALDPTAG SWYGPADAGA GEEFHLVWGR 240 SITSALFSSF S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45650.1 | 5e-26 | MIKC_MADS family protein |